Pteropus associated gemycircularvirus 7

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus ptero7

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A140CTQ5|A0A140CTQ5_9VIRU RepA OS=Pteropus associated gemycircularvirus 7 OX=1985401 PE=3 SV=1
MM1 pKa = 7.72APFILKK7 pKa = 9.68NVRR10 pKa = 11.84RR11 pKa = 11.84ALITYY16 pKa = 7.03SQCGNLDD23 pKa = 3.41PFEE26 pKa = 4.42VSNHH30 pKa = 5.21FSNLGAEE37 pKa = 4.53CIVGRR42 pKa = 11.84EE43 pKa = 3.85RR44 pKa = 11.84HH45 pKa = 5.69SDD47 pKa = 3.32GGIHH51 pKa = 6.34LHH53 pKa = 5.85VFVDD57 pKa = 4.6FGRR60 pKa = 11.84QFSSRR65 pKa = 11.84KK66 pKa = 7.81TDD68 pKa = 3.11VFDD71 pKa = 5.05VGGCHH76 pKa = 6.86PNIAKK81 pKa = 10.4CGRR84 pKa = 11.84TPWKK88 pKa = 10.45AYY90 pKa = 10.52DD91 pKa = 3.69YY92 pKa = 10.6AIKK95 pKa = 10.92DD96 pKa = 3.52GDD98 pKa = 4.01VVAGGLEE105 pKa = 4.14RR106 pKa = 11.84PDD108 pKa = 3.99EE109 pKa = 4.22EE110 pKa = 5.45SGDD113 pKa = 3.82GSGSVDD119 pKa = 3.91STWHH123 pKa = 6.36SILAAEE129 pKa = 4.52TPEE132 pKa = 4.32EE133 pKa = 4.32FWSLCHH139 pKa = 7.16DD140 pKa = 4.78LAPRR144 pKa = 11.84DD145 pKa = 3.72LARR148 pKa = 11.84SFPSLQKK155 pKa = 10.22YY156 pKa = 9.88CDD158 pKa = 2.84WRR160 pKa = 11.84YY161 pKa = 10.12RR162 pKa = 11.84PVTRR166 pKa = 11.84PYY168 pKa = 9.3STPAGYY174 pKa = 10.65DD175 pKa = 3.22FDD177 pKa = 4.43TSCAPEE183 pKa = 4.25LDD185 pKa = 3.52EE186 pKa = 6.07WLLQANLGLRR196 pKa = 11.84EE197 pKa = 4.05LGLRR201 pKa = 3.92

Molecular weight: 22.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A140CTQ4|A0A140CTQ4_9VIRU Replication-associated protein OS=Pteropus associated gemycircularvirus 7 OX=1985401 PE=3 SV=1
MM1 pKa = 7.49PRR3 pKa = 11.84YY4 pKa = 9.86ANRR7 pKa = 11.84RR8 pKa = 11.84ISKK11 pKa = 10.11KK12 pKa = 6.42YY13 pKa = 8.64TKK15 pKa = 9.42TKK17 pKa = 8.96RR18 pKa = 11.84KK19 pKa = 8.87PYY21 pKa = 9.61RR22 pKa = 11.84RR23 pKa = 11.84PARR26 pKa = 11.84PSKK29 pKa = 10.66KK30 pKa = 10.22YY31 pKa = 10.44GGKK34 pKa = 9.96SSLKK38 pKa = 10.53KK39 pKa = 9.91MLNLVSTKK47 pKa = 10.34KK48 pKa = 10.15RR49 pKa = 11.84DD50 pKa = 3.49TMLTYY55 pKa = 11.15SNTSASKK62 pKa = 9.82PAGDD66 pKa = 4.05TNYY69 pKa = 10.23GAHH72 pKa = 7.52DD73 pKa = 3.57ATLIGGQSYY82 pKa = 10.16IFPWVATARR91 pKa = 11.84PAITTDD97 pKa = 3.07NNAGFPIDD105 pKa = 3.71QACRR109 pKa = 11.84TASTCYY115 pKa = 9.54MRR117 pKa = 11.84GLKK120 pKa = 9.81EE121 pKa = 4.55RR122 pKa = 11.84ITMQTNTGSAWQWRR136 pKa = 11.84RR137 pKa = 11.84ICFTMKK143 pKa = 10.4GDD145 pKa = 3.72QLYY148 pKa = 8.1STDD151 pKa = 3.35GSNLRR156 pKa = 11.84WSLMANEE163 pKa = 4.41VGGVTGMVRR172 pKa = 11.84VLNSVSGSNAGSTLVDD188 pKa = 4.88LIFRR192 pKa = 11.84GKK194 pKa = 10.47FGQDD198 pKa = 2.75WNNVMSAPLDD208 pKa = 3.59QNLITVKK215 pKa = 10.28YY216 pKa = 9.67DD217 pKa = 3.06KK218 pKa = 10.58TRR220 pKa = 11.84SIQSGNDD227 pKa = 3.22DD228 pKa = 4.51GILRR232 pKa = 11.84TYY234 pKa = 10.68SRR236 pKa = 11.84WHH238 pKa = 6.38PMAKK242 pKa = 9.96NLVYY246 pKa = 10.74GDD248 pKa = 4.43DD249 pKa = 3.84EE250 pKa = 5.0NGGFEE255 pKa = 3.95DD256 pKa = 3.46TRR258 pKa = 11.84RR259 pKa = 11.84YY260 pKa = 9.63SAGGKK265 pKa = 10.08AGMGDD270 pKa = 4.07YY271 pKa = 10.92YY272 pKa = 11.33VIDD275 pKa = 5.13IINSALGSAPTDD287 pKa = 3.49QLILGINSILYY298 pKa = 7.96WHH300 pKa = 7.02EE301 pKa = 3.84KK302 pKa = 9.39

Molecular weight: 33.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

820

201

317

273.3

30.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.951 ± 0.006

2.317 ± 0.587

7.439 ± 0.51

4.146 ± 1.073

4.146 ± 0.93

9.146 ± 0.196

2.561 ± 0.667

4.39 ± 0.534

5.0 ± 0.906

7.683 ± 0.523

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.829 ± 0.782

4.024 ± 0.969

5.122 ± 0.63

2.439 ± 0.237

6.585 ± 0.574

8.293 ± 0.148

5.732 ± 1.091

5.122 ± 0.501

2.683 ± 0.219

4.39 ± 0.417
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski