Capybara microvirus Cap1_SP_121

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W7V5|A0A4P8W7V5_9VIRU Nonstructural protein OS=Capybara microvirus Cap1_SP_121 OX=2584812 PE=4 SV=1
MM1 pKa = 7.58IFGSRR6 pKa = 11.84TNLPKK11 pKa = 10.0TVYY14 pKa = 10.49APAGEE19 pKa = 4.58KK20 pKa = 9.94EE21 pKa = 4.25VNTYY25 pKa = 10.29ILEE28 pKa = 4.17TDD30 pKa = 3.21KK31 pKa = 11.69NGNTFLTVDD40 pKa = 3.74GTEE43 pKa = 4.73DD44 pKa = 3.53IYY46 pKa = 11.73AKK48 pKa = 9.29TQADD52 pKa = 4.06LEE54 pKa = 4.35DD55 pKa = 3.96SKK57 pKa = 11.32IEE59 pKa = 4.07NIIARR64 pKa = 11.84VQYY67 pKa = 11.06GDD69 pKa = 3.31ISALSARR76 pKa = 11.84QGIYY80 pKa = 10.84GDD82 pKa = 3.3IAEE85 pKa = 4.91MPKK88 pKa = 10.0SWAEE92 pKa = 3.88AQTKK96 pKa = 8.25MMAMEE101 pKa = 4.35QIFNKK106 pKa = 10.24LPLEE110 pKa = 3.98MRR112 pKa = 11.84EE113 pKa = 4.3SYY115 pKa = 10.51GFNYY119 pKa = 10.04KK120 pKa = 10.59AFIADD125 pKa = 3.57YY126 pKa = 10.61GSEE129 pKa = 3.95KK130 pKa = 10.32FMKK133 pKa = 10.52AIGITKK139 pKa = 9.64PEE141 pKa = 4.37PDD143 pKa = 3.17AAAPEE148 pKa = 4.19QEE150 pKa = 4.0KK151 pKa = 11.41GEE153 pKa = 4.29TKK155 pKa = 10.25EE156 pKa = 3.85

Molecular weight: 17.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W598|A0A4P8W598_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_121 OX=2584812 PE=4 SV=1
MM1 pKa = 7.4NKK3 pKa = 9.5EE4 pKa = 3.7QTTTISIEE12 pKa = 3.9LTQAEE17 pKa = 4.45IKK19 pKa = 9.33TIKK22 pKa = 9.9RR23 pKa = 11.84AKK25 pKa = 9.81KK26 pKa = 10.15LNADD30 pKa = 3.43IYY32 pKa = 10.36GKK34 pKa = 10.54RR35 pKa = 11.84IQFEE39 pKa = 4.18NYY41 pKa = 8.91IKK43 pKa = 10.55GRR45 pKa = 11.84LMADD49 pKa = 2.58SRR51 pKa = 11.84MILSMWYY58 pKa = 9.62EE59 pKa = 4.09SRR61 pKa = 11.84AEE63 pKa = 4.04EE64 pKa = 4.68DD65 pKa = 3.22WQQMIEE71 pKa = 4.04NMEE74 pKa = 4.2KK75 pKa = 9.26KK76 pKa = 8.66TT77 pKa = 3.62

Molecular weight: 9.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1502

77

579

214.6

24.29

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.389 ± 1.16

0.732 ± 0.378

4.461 ± 0.605

8.322 ± 1.378

2.863 ± 0.767

7.124 ± 1.32

1.398 ± 0.472

5.459 ± 0.877

6.391 ± 1.283

6.924 ± 0.891

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

4.328 ± 0.494

4.66 ± 0.588

3.795 ± 0.727

4.927 ± 0.396

4.594 ± 0.718

7.19 ± 1.31

6.858 ± 0.484

4.261 ± 0.562

2.53 ± 0.481

4.794 ± 0.654
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski