Candidatus Termititenax dinenymphae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Cyanobacteria/Melainabacteria group; Candidatus Margulisbacteria; Candidatus Termititenacia; Candidatus Termititenacales; Candidatus Termititenacaceae; Candidatus Termititenax

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 355 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A388TJJ5|A0A388TJJ5_9BACT Inner membrane protein translocase component YidC OS=Candidatus Termititenax dinenymphae OX=2218523 GN=yidC PE=3 SV=1
MM1 pKa = 8.03VMAILEE7 pKa = 4.34NFDD10 pKa = 3.56EE11 pKa = 4.95PEE13 pKa = 4.05NGEE16 pKa = 4.55DD17 pKa = 4.22KK18 pKa = 11.03DD19 pKa = 4.54LEE21 pKa = 4.26YY22 pKa = 11.03TEE24 pKa = 4.37YY25 pKa = 11.04LSRR28 pKa = 11.84YY29 pKa = 8.99YY30 pKa = 11.24GDD32 pKa = 4.64ALADD36 pKa = 3.58MFNSNSAAEE45 pKa = 4.01QSEE48 pKa = 4.03MDD50 pKa = 3.47EE51 pKa = 4.2VFPYY55 pKa = 10.45EE56 pKa = 3.78VLIFSEE62 pKa = 4.35QPGILRR68 pKa = 11.84IKK70 pKa = 10.37

Molecular weight: 8.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A388TKA1|A0A388TKA1_9BACT Uncharacterized protein OS=Candidatus Termititenax dinenymphae OX=2218523 GN=RDn1_145 PE=4 SV=1
MM1 pKa = 7.68LKK3 pKa = 9.16TLTRR7 pKa = 11.84QSDD10 pKa = 3.69FQTVYY15 pKa = 9.19EE16 pKa = 4.28TGRR19 pKa = 11.84KK20 pKa = 7.34QVSRR24 pKa = 11.84SFVLFYY30 pKa = 10.85LPHH33 pKa = 7.27AEE35 pKa = 3.46FRR37 pKa = 11.84YY38 pKa = 10.39AVVASKK44 pKa = 9.07KK45 pKa = 8.19TIGNAVHH52 pKa = 7.13RR53 pKa = 11.84NRR55 pKa = 11.84AKK57 pKa = 10.29RR58 pKa = 11.84LLRR61 pKa = 11.84EE62 pKa = 4.35LVRR65 pKa = 11.84STAAPLLSGRR75 pKa = 11.84QAGYY79 pKa = 8.6LTLVARR85 pKa = 11.84AAVLKK90 pKa = 10.13TGLEE94 pKa = 3.96QMKK97 pKa = 10.76EE98 pKa = 3.98EE99 pKa = 4.74LAKK102 pKa = 10.65CLKK105 pKa = 10.29NWLSDD110 pKa = 3.22

Molecular weight: 12.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

355

0

355

108270

30

4150

305.0

34.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.072 ± 0.124

0.835 ± 0.058

5.747 ± 0.118

6.366 ± 0.121

4.058 ± 0.093

6.723 ± 0.142

1.692 ± 0.059

7.152 ± 0.116

7.164 ± 0.184

9.899 ± 0.188

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.976 ± 0.069

5.026 ± 0.137

3.758 ± 0.072

4.045 ± 0.103

4.528 ± 0.093

5.865 ± 0.115

5.728 ± 0.129

6.438 ± 0.121

0.854 ± 0.05

4.073 ± 0.136
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski