Vagococcus teuberi

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Vagococcus

Average proteome isoelectric point is 6.12

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1935 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1J0A777|A0A1J0A777_9ENTE Bacteriocin ABC transporter ATP-binding protein OS=Vagococcus teuberi OX=519472 GN=BHY08_08060 PE=4 SV=1
MM1 pKa = 7.85AIAKK5 pKa = 9.25IVYY8 pKa = 10.22ASLTGNTEE16 pKa = 3.93EE17 pKa = 4.62IADD20 pKa = 3.63IVAEE24 pKa = 3.94RR25 pKa = 11.84LEE27 pKa = 4.32EE28 pKa = 4.33KK29 pKa = 10.86GLDD32 pKa = 3.74VEE34 pKa = 5.57IEE36 pKa = 3.98EE37 pKa = 4.6CTQVDD42 pKa = 3.46AEE44 pKa = 4.56EE45 pKa = 4.85FLDD48 pKa = 4.67ADD50 pKa = 3.47ICIVGSYY57 pKa = 9.76TYY59 pKa = 11.3DD60 pKa = 3.42DD61 pKa = 3.78VLVPDD66 pKa = 5.61EE67 pKa = 4.54IADD70 pKa = 4.14FYY72 pKa = 11.72EE73 pKa = 5.4DD74 pKa = 5.31LLEE77 pKa = 5.62LDD79 pKa = 4.43LTGKK83 pKa = 10.09IYY85 pKa = 10.66GVIGSGDD92 pKa = 3.13TFYY95 pKa = 10.87PCFCQVVDD103 pKa = 3.95QFDD106 pKa = 3.58KK107 pKa = 11.3AFQSTGAIKK116 pKa = 10.27GAEE119 pKa = 4.13SVKK122 pKa = 10.33VDD124 pKa = 4.23LAAEE128 pKa = 4.15EE129 pKa = 4.35DD130 pKa = 4.51DD131 pKa = 4.4IVALEE136 pKa = 4.25AFADD140 pKa = 3.95ALVKK144 pKa = 10.74QLDD147 pKa = 3.47

Molecular weight: 16.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1J0A8D0|A0A1J0A8D0_9ENTE Lysine--tRNA ligase OS=Vagococcus teuberi OX=519472 GN=lysS PE=3 SV=1
MM1 pKa = 7.36KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 9.7QPKK8 pKa = 8.83KK9 pKa = 9.05RR10 pKa = 11.84KK11 pKa = 7.43RR12 pKa = 11.84QKK14 pKa = 8.87VHH16 pKa = 5.8GFRR19 pKa = 11.84KK20 pKa = 10.04RR21 pKa = 11.84MSTKK25 pKa = 9.46NGRR28 pKa = 11.84RR29 pKa = 11.84VLASRR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 8.8GRR39 pKa = 11.84KK40 pKa = 8.76VLAAA44 pKa = 4.31

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1935

0

1935

603234

37

1783

311.7

35.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.06 ± 0.057

0.655 ± 0.014

5.814 ± 0.053

7.216 ± 0.063

4.44 ± 0.051

6.405 ± 0.061

1.859 ± 0.024

8.052 ± 0.059

7.432 ± 0.056

9.738 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.824 ± 0.029

4.83 ± 0.05

3.33 ± 0.035

3.701 ± 0.04

3.467 ± 0.045

6.497 ± 0.051

6.019 ± 0.05

7.116 ± 0.052

0.819 ± 0.018

3.724 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski