Gammapapillomavirus 24

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Gammapapillomavirus

Average proteome isoelectric point is 5.99

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D2AM75|A0A2D2AM75_9PAPI Replication protein E1 OS=Gammapapillomavirus 24 OX=1961681 GN=E1 PE=3 SV=1
MM1 pKa = 7.62EE2 pKa = 5.41PRR4 pKa = 11.84AKK6 pKa = 9.9RR7 pKa = 11.84QKK9 pKa = 10.17RR10 pKa = 11.84DD11 pKa = 3.45SVEE14 pKa = 3.53NLYY17 pKa = 10.18RR18 pKa = 11.84QCKK21 pKa = 8.4LTGQCPDD28 pKa = 3.27DD29 pKa = 4.54VINKK33 pKa = 9.42VEE35 pKa = 4.15GNTLADD41 pKa = 3.99RR42 pKa = 11.84LLKK45 pKa = 10.5ILGSVIYY52 pKa = 10.6LGGLGIGTGRR62 pKa = 11.84GSGGSTGYY70 pKa = 10.46RR71 pKa = 11.84PIGATTPRR79 pKa = 11.84VTDD82 pKa = 3.47STPIRR87 pKa = 11.84PTVPVDD93 pKa = 3.3PLGPTDD99 pKa = 4.24VLPVDD104 pKa = 3.63PAGPSIVPLTEE115 pKa = 3.78SGIPEE120 pKa = 3.91DD121 pKa = 4.43TIIEE125 pKa = 4.33TSGTAVTVNPTEE137 pKa = 4.19PPVITNIDD145 pKa = 4.31PISDD149 pKa = 3.57VTGVEE154 pKa = 4.11GQPTIITGEE163 pKa = 4.16DD164 pKa = 3.31DD165 pKa = 3.69SVAVLDD171 pKa = 4.36VQPSTPAPKK180 pKa = 9.96RR181 pKa = 11.84VTIGVRR187 pKa = 11.84PRR189 pKa = 11.84TSSPSEE195 pKa = 3.62PTLYY199 pKa = 10.2PIPEE203 pKa = 4.14PAAPDD208 pKa = 3.34FTVFVDD214 pKa = 4.21AQAVGEE220 pKa = 4.53TIGGEE225 pKa = 4.15YY226 pKa = 9.98IPLEE230 pKa = 4.4EE231 pKa = 5.01FSQIQNFEE239 pKa = 3.9IEE241 pKa = 4.32EE242 pKa = 4.05QQTLSSTPEE251 pKa = 3.53QRR253 pKa = 11.84LNRR256 pKa = 11.84AFQRR260 pKa = 11.84ARR262 pKa = 11.84DD263 pKa = 3.75LYY265 pKa = 10.82NRR267 pKa = 11.84QITQIRR273 pKa = 11.84TRR275 pKa = 11.84NLDD278 pKa = 3.42FLGAASRR285 pKa = 11.84AVQFEE290 pKa = 4.21FEE292 pKa = 4.35NPAFVDD298 pKa = 4.1DD299 pKa = 3.74VTLQFEE305 pKa = 4.18QDD307 pKa = 3.6VRR309 pKa = 11.84DD310 pKa = 3.84VAAAPDD316 pKa = 3.96PDD318 pKa = 3.57FRR320 pKa = 11.84DD321 pKa = 3.0IVTLHH326 pKa = 6.93RR327 pKa = 11.84ARR329 pKa = 11.84YY330 pKa = 7.11STTDD334 pKa = 2.98TGRR337 pKa = 11.84VRR339 pKa = 11.84VSRR342 pKa = 11.84LGKK345 pKa = 9.98RR346 pKa = 11.84GTIVTRR352 pKa = 11.84SGAQIGEE359 pKa = 4.3NVHH362 pKa = 6.74FYY364 pKa = 11.29YY365 pKa = 10.63DD366 pKa = 3.37VSTIGSDD373 pKa = 3.03AADD376 pKa = 4.67AIEE379 pKa = 4.85LSTIGQHH386 pKa = 6.19SGDD389 pKa = 3.93SAIVDD394 pKa = 3.93ALAEE398 pKa = 4.21SSFINPIEE406 pKa = 4.54NPDD409 pKa = 3.5TTYY412 pKa = 11.17TEE414 pKa = 4.76ADD416 pKa = 3.53LLDD419 pKa = 3.98TQVEE423 pKa = 4.44DD424 pKa = 4.06FDD426 pKa = 4.71GLHH429 pKa = 6.6LVLTSSGRR437 pKa = 11.84RR438 pKa = 11.84GDD440 pKa = 3.77VYY442 pKa = 10.94SIPTLPPGTTLRR454 pKa = 11.84VFVDD458 pKa = 3.69DD459 pKa = 3.76YY460 pKa = 11.89GRR462 pKa = 11.84DD463 pKa = 3.49LFVSYY468 pKa = 9.96PVSHH472 pKa = 7.03TKK474 pKa = 9.95TDD476 pKa = 3.02ILLPDD481 pKa = 3.85EE482 pKa = 4.93ALHH485 pKa = 5.98PLEE488 pKa = 5.24PPVLLDD494 pKa = 4.66AYY496 pKa = 11.12SSDD499 pKa = 4.48YY500 pKa = 10.76YY501 pKa = 10.81LHH503 pKa = 6.96PSLWSRR509 pKa = 11.84RR510 pKa = 11.84KK511 pKa = 9.64RR512 pKa = 11.84KK513 pKa = 10.01RR514 pKa = 11.84SDD516 pKa = 2.5IYY518 pKa = 11.62NFFTDD523 pKa = 3.75GTVDD527 pKa = 3.15ATEE530 pKa = 3.84WW531 pKa = 3.26

Molecular weight: 58.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D2AM89|A0A2D2AM89_9PAPI Protein E7 OS=Gammapapillomavirus 24 OX=1961681 GN=E7 PE=3 SV=1
MM1 pKa = 7.53EE2 pKa = 4.87WLTDD6 pKa = 3.37RR7 pKa = 11.84FNAVQEE13 pKa = 4.27TLLNLIEE20 pKa = 5.37QGAQDD25 pKa = 4.68LDD27 pKa = 3.89SQIEE31 pKa = 4.04YY32 pKa = 9.14WNNVRR37 pKa = 11.84KK38 pKa = 10.07EE39 pKa = 4.14NVYY42 pKa = 9.03MYY44 pKa = 9.06YY45 pKa = 10.86AKK47 pKa = 10.48RR48 pKa = 11.84EE49 pKa = 4.13GLTHH53 pKa = 7.23IGLQPLPVPAVSEE66 pKa = 4.36YY67 pKa = 10.27KK68 pKa = 10.53AKK70 pKa = 10.38QAIHH74 pKa = 6.71LVLLLQSLKK83 pKa = 10.22KK84 pKa = 10.44SPYY87 pKa = 8.68ATEE90 pKa = 3.86SWTLQNTSEE99 pKa = 4.27EE100 pKa = 4.74LINTQPKK107 pKa = 10.61DD108 pKa = 3.61CFKK111 pKa = 10.38KK112 pKa = 9.74HH113 pKa = 6.45PYY115 pKa = 8.21TVEE118 pKa = 3.4VWFDD122 pKa = 3.18NDD124 pKa = 3.47RR125 pKa = 11.84NNSYY129 pKa = 10.75PYY131 pKa = 10.25INWDD135 pKa = 3.5AIYY138 pKa = 10.67YY139 pKa = 9.85QDD141 pKa = 5.31SQEE144 pKa = 4.16KK145 pKa = 6.18WHH147 pKa = 6.44KK148 pKa = 10.75VPGLVDD154 pKa = 3.71YY155 pKa = 11.46NGLYY159 pKa = 9.67YY160 pKa = 10.94NEE162 pKa = 4.3VGGDD166 pKa = 2.95RR167 pKa = 11.84VYY169 pKa = 10.36FTIFDD174 pKa = 3.9TDD176 pKa = 3.34AQKK179 pKa = 11.07YY180 pKa = 7.97GQTGMWTVHH189 pKa = 6.53FKK191 pKa = 10.91RR192 pKa = 11.84KK193 pKa = 7.85TLVAPISSSKK203 pKa = 10.37QSSAYY208 pKa = 10.02SGKK211 pKa = 8.23TPTSVSSSSKK221 pKa = 9.66DD222 pKa = 3.3TLPTKK227 pKa = 10.07EE228 pKa = 4.14SPRR231 pKa = 11.84RR232 pKa = 11.84LQRR235 pKa = 11.84PEE237 pKa = 4.02VGSSTGEE244 pKa = 3.83TTAVRR249 pKa = 11.84RR250 pKa = 11.84RR251 pKa = 11.84RR252 pKa = 11.84RR253 pKa = 11.84EE254 pKa = 3.73QGEE257 pKa = 4.26SSTDD261 pKa = 3.56GEE263 pKa = 4.42PTTTSKK269 pKa = 10.52RR270 pKa = 11.84RR271 pKa = 11.84RR272 pKa = 11.84GGGGGGGTGRR282 pKa = 11.84LGVSPEE288 pKa = 4.15EE289 pKa = 4.23VGSRR293 pKa = 11.84HH294 pKa = 5.55HH295 pKa = 6.53SATGRR300 pKa = 11.84HH301 pKa = 4.64RR302 pKa = 11.84TRR304 pKa = 11.84LEE306 pKa = 3.62QLKK309 pKa = 10.45EE310 pKa = 3.9EE311 pKa = 4.59ARR313 pKa = 11.84DD314 pKa = 3.53PPIIIVTGPANSLKK328 pKa = 9.67CWRR331 pKa = 11.84YY332 pKa = 9.64RR333 pKa = 11.84KK334 pKa = 9.51QNSNAFPFLAVSTIFTWVGGCGSAEE359 pKa = 4.0QARR362 pKa = 11.84MLIAFNTNEE371 pKa = 4.42EE372 pKa = 3.9RR373 pKa = 11.84TQFIKK378 pKa = 10.85YY379 pKa = 8.54VQFPKK384 pKa = 9.52QTTFALGQLDD394 pKa = 3.7KK395 pKa = 11.57LL396 pKa = 4.16

Molecular weight: 45.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2448

95

607

349.7

39.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.596 ± 0.495

2.206 ± 0.607

6.985 ± 0.748

6.25 ± 0.512

4.248 ± 0.415

5.76 ± 0.652

1.838 ± 0.227

5.27 ± 0.466

5.351 ± 0.905

8.864 ± 0.488

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.471 ± 0.322

4.453 ± 0.454

5.964 ± 1.017

5.351 ± 0.417

5.882 ± 0.692

6.618 ± 0.388

6.618 ± 0.761

6.168 ± 0.448

1.225 ± 0.284

3.881 ± 0.344
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski