Corchorus olitorius

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 35489 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1R3JVW1|A0A1R3JVW1_9ROSI CCT-theta OS=Corchorus olitorius OX=93759 GN=COLO4_13606 PE=3 SV=1
MM1 pKa = 7.83DD2 pKa = 4.74NKK4 pKa = 10.24NGSMVDD10 pKa = 3.32VSCFLLVEE18 pKa = 4.48DD19 pKa = 5.07SGDD22 pKa = 3.95SEE24 pKa = 5.86LEE26 pKa = 3.8RR27 pKa = 11.84QGNMDD32 pKa = 4.88IIATMAADD40 pKa = 3.84NYY42 pKa = 10.26HH43 pKa = 7.29DD44 pKa = 4.35EE45 pKa = 5.03GDD47 pKa = 4.59AEE49 pKa = 4.45SCSCDD54 pKa = 3.04TSEE57 pKa = 5.74RR58 pKa = 11.84LDD60 pKa = 3.67DD61 pKa = 5.55FYY63 pKa = 11.82DD64 pKa = 3.72EE65 pKa = 5.76LVQLDD70 pKa = 3.88DD71 pKa = 4.41HH72 pKa = 7.08HH73 pKa = 7.21DD74 pKa = 3.47QGFKK78 pKa = 10.36DD79 pKa = 4.87CKK81 pKa = 10.73LLDD84 pKa = 4.83PIAADD89 pKa = 3.68GWSSCSKK96 pKa = 9.75IWSIDD101 pKa = 3.35EE102 pKa = 4.33ALGSTLSVDD111 pKa = 3.91DD112 pKa = 4.17QEE114 pKa = 4.56QSFGINLCRR123 pKa = 11.84EE124 pKa = 4.24VMDD127 pKa = 4.17GMEE130 pKa = 5.78DD131 pKa = 3.16RR132 pKa = 11.84LFWEE136 pKa = 4.15TCIAVGYY143 pKa = 8.54PLNN146 pKa = 3.93

Molecular weight: 16.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1R3ILW5|A0A1R3ILW5_9ROSI Zonadhesin-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_22410 PE=4 SV=1
MM1 pKa = 7.82KK2 pKa = 10.29ARR4 pKa = 11.84NPPARR9 pKa = 11.84RR10 pKa = 11.84IPRR13 pKa = 11.84LMRR16 pKa = 11.84RR17 pKa = 11.84KK18 pKa = 9.34RR19 pKa = 11.84HH20 pKa = 6.05RR21 pKa = 11.84GWPPRR26 pKa = 11.84GWRR29 pKa = 11.84STT31 pKa = 3.36

Molecular weight: 3.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

35489

0

35489

11105778

29

4461

312.9

34.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.83 ± 0.015

1.862 ± 0.008

5.293 ± 0.01

6.515 ± 0.015

4.285 ± 0.012

6.536 ± 0.012

2.337 ± 0.006

5.384 ± 0.011

6.2 ± 0.013

9.646 ± 0.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.471 ± 0.006

4.563 ± 0.011

4.985 ± 0.016

3.764 ± 0.011

5.291 ± 0.013

8.711 ± 0.018

4.8 ± 0.009

6.453 ± 0.01

1.305 ± 0.005

2.768 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski