Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus; Deinococcus deserti

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3459 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C1D3P1|C1D3P1_DEIDV Uncharacterized protein OS=Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115) OX=546414 GN=Deide_3p01740 PE=4 SV=1
MM1 pKa = 7.87AKK3 pKa = 8.89GTLDD7 pKa = 3.2TSRR10 pKa = 11.84IRR12 pKa = 11.84DD13 pKa = 3.33WEE15 pKa = 4.35TFHH18 pKa = 7.15DD19 pKa = 3.87VSMQAFGFPDD29 pKa = 4.69FYY31 pKa = 11.12GRR33 pKa = 11.84NMDD36 pKa = 3.52AWIDD40 pKa = 3.66CLTYY44 pKa = 10.6LDD46 pKa = 4.81EE47 pKa = 6.3ADD49 pKa = 3.85GMSSVVLGSDD59 pKa = 3.55EE60 pKa = 4.57LLCIHH65 pKa = 6.31VPGFSIFAASLPDD78 pKa = 3.37VANAFLACSCFHH90 pKa = 6.02QPAVYY95 pKa = 8.5RR96 pKa = 11.84TEE98 pKa = 4.27GCFPTDD104 pKa = 3.58FDD106 pKa = 4.14AA107 pKa = 6.82

Molecular weight: 11.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C1CV97|C1CV97_DEIDV Putative DegV family protein OS=Deinococcus deserti (strain DSM 17065 / CIP 109153 / LMG 22923 / VCD115) OX=546414 GN=Deide_12040 PE=4 SV=1
MM1 pKa = 8.12DD2 pKa = 4.81SLGALAAQFGIANLFGRR19 pKa = 11.84GFISVIITFFAAWVFTWQFIPRR41 pKa = 11.84LRR43 pKa = 11.84DD44 pKa = 3.26FAVKK48 pKa = 10.32AGWADD53 pKa = 3.35QPNARR58 pKa = 11.84RR59 pKa = 11.84LNKK62 pKa = 10.16EE63 pKa = 3.86PLPNAGGLAIFAGFITSVVLAWALRR88 pKa = 11.84PIMVEE93 pKa = 3.66LVNIQVLSILLGASIMVLVGFIDD116 pKa = 3.86DD117 pKa = 3.94QFGLSPVTRR126 pKa = 11.84LVVQVLVAVLLVVNGLKK143 pKa = 9.43MDD145 pKa = 4.5FNAIPFLPVLPEE157 pKa = 3.99AVNEE161 pKa = 4.05PLSTLLTIVWIVGLTNAVNLMDD183 pKa = 4.56GVDD186 pKa = 3.82GVVGGVGFVVSMVLLVTAAQFTDD209 pKa = 3.37RR210 pKa = 11.84AAAVILLAGLAGATLGYY227 pKa = 10.07LRR229 pKa = 11.84HH230 pKa = 6.18NFNPSRR236 pKa = 11.84IIMGDD241 pKa = 2.77AGAYY245 pKa = 10.48LIGFTLAAVSLLGTLKK261 pKa = 10.5FSAGASLIVPLIVLALPVLDD281 pKa = 3.76TTQVVIGRR289 pKa = 11.84LARR292 pKa = 11.84GIRR295 pKa = 11.84NPLGHH300 pKa = 7.52PDD302 pKa = 3.16KK303 pKa = 10.5THH305 pKa = 4.92IHH307 pKa = 5.91HH308 pKa = 6.94RR309 pKa = 11.84VLARR313 pKa = 11.84TASARR318 pKa = 11.84RR319 pKa = 11.84TAVILWMVALACGMLGMLLQGVPLLAIGLTGVLVLVCLWFVAHH362 pKa = 6.21RR363 pKa = 11.84RR364 pKa = 11.84VRR366 pKa = 11.84AHH368 pKa = 5.87SRR370 pKa = 11.84EE371 pKa = 4.12DD372 pKa = 3.25RR373 pKa = 11.84PAAAPEE379 pKa = 4.16SHH381 pKa = 5.89STRR384 pKa = 11.84PP385 pKa = 3.3

Molecular weight: 41.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3459

0

3459

1081085

10

3511

312.5

33.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.87 ± 0.059

0.616 ± 0.011

5.063 ± 0.032

5.596 ± 0.05

3.155 ± 0.024

8.769 ± 0.046

2.331 ± 0.024

3.687 ± 0.036

2.49 ± 0.035

11.513 ± 0.054

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.081 ± 0.02

2.561 ± 0.03

5.646 ± 0.036

4.069 ± 0.029

7.327 ± 0.044

5.397 ± 0.03

6.159 ± 0.044

7.993 ± 0.035

1.349 ± 0.019

2.329 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski