Amino acid dipepetide frequency for Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	16.961AlaAla: 16.961 ± 0.178	1.003AlaCys: 1.003 ± 0.026	6.773AlaAsp: 6.773 ± 0.075	6.413AlaGlu: 6.413 ± 0.083	4.002AlaPhe: 4.002 ± 0.05	10.132AlaGly: 10.132 ± 0.097	2.488AlaHis: 2.488 ± 0.042	5.551AlaIle: 5.551 ± 0.064	2.929AlaLys: 2.929 ± 0.064	14.084AlaLeu: 14.084 ± 0.129	3.321AlaMet: 3.321 ± 0.051	3.053AlaAsn: 3.053 ± 0.05	6.788AlaPro: 6.788 ± 0.094	4.757AlaGln: 4.757 ± 0.069	10.203AlaArg: 10.203 ± 0.102	7.525AlaSer: 7.525 ± 0.09	7.775AlaThr: 7.775 ± 0.079	9.725AlaVal: 9.725 ± 0.09	1.74AlaTrp: 1.74 ± 0.041	2.309AlaTyr: 2.309 ± 0.037	0.0AlaXaa: 0.0 ± 0.0
Cys	0.909CysAla: 0.909 ± 0.026	0.084CysCys: 0.084 ± 0.009	0.436CysAsp: 0.436 ± 0.021	0.347CysGlu: 0.347 ± 0.017	0.23CysPhe: 0.23 ± 0.013	0.828CysGly: 0.828 ± 0.027	0.181CysHis: 0.181 ± 0.012	0.281CysIle: 0.281 ± 0.014	0.124CysLys: 0.124 ± 0.01	0.556CysLeu: 0.556 ± 0.021	0.122CysMet: 0.122 ± 0.009	0.164CysAsn: 0.164 ± 0.011	0.361CysPro: 0.361 ± 0.018	0.166CysGln: 0.166 ± 0.011	0.476CysArg: 0.476 ± 0.019	0.403CysSer: 0.403 ± 0.02	0.463CysThr: 0.463 ± 0.019	0.555CysVal: 0.555 ± 0.023	0.095CysTrp: 0.095 ± 0.011	0.142CysTyr: 0.142 ± 0.01	0.0CysXaa: 0.0 ± 0.0
Asp	7.896AspAla: 7.896 ± 0.084	0.323AspCys: 0.323 ± 0.018	3.09AspAsp: 3.09 ± 0.061	2.969AspGlu: 2.969 ± 0.054	1.697AspPhe: 1.697 ± 0.035	5.229AspGly: 5.229 ± 0.065	1.065AspHis: 1.065 ± 0.024	2.381AspIle: 2.381 ± 0.046	1.019AspLys: 1.019 ± 0.032	5.048AspLeu: 5.048 ± 0.065	0.975AspMet: 0.975 ± 0.027	1.126AspAsn: 1.126 ± 0.029	3.119AspPro: 3.119 ± 0.051	1.577AspGln: 1.577 ± 0.032	4.421AspArg: 4.421 ± 0.069	3.224AspSer: 3.224 ± 0.067	3.075AspThr: 3.075 ± 0.053	5.134AspVal: 5.134 ± 0.06	0.804AspTrp: 0.804 ± 0.024	1.107AspTyr: 1.107 ± 0.03	0.0AspXaa: 0.0 ± 0.0
Glu	6.237GluAla: 6.237 ± 0.069	0.325GluCys: 0.325 ± 0.015	2.087GluAsp: 2.087 ± 0.045	2.447GluGlu: 2.447 ± 0.053	1.575GluPhe: 1.575 ± 0.031	3.717GluGly: 3.717 ± 0.058	1.204GluHis: 1.204 ± 0.029	2.33GluIle: 2.33 ± 0.045	1.294GluLys: 1.294 ± 0.032	5.418GluLeu: 5.418 ± 0.076	1.119GluMet: 1.119 ± 0.03	1.079GluAsn: 1.079 ± 0.029	2.393GluPro: 2.393 ± 0.047	2.42GluGln: 2.42 ± 0.045	5.353GluArg: 5.353 ± 0.073	2.815GluSer: 2.815 ± 0.044	2.733GluThr: 2.733 ± 0.046	3.789GluVal: 3.789 ± 0.059	0.791GluTrp: 0.791 ± 0.022	1.089GluTyr: 1.089 ± 0.031	0.0GluXaa: 0.0 ± 0.0
Phe	4.038PheAla: 4.038 ± 0.056	0.218PheCys: 0.218 ± 0.011	2.316PheAsp: 2.316 ± 0.042	1.678PheGlu: 1.678 ± 0.036	1.081PhePhe: 1.081 ± 0.03	3.224PheGly: 3.224 ± 0.049	0.602PheHis: 0.602 ± 0.022	1.143PheIle: 1.143 ± 0.028	0.692PheLys: 0.692 ± 0.022	2.796PheLeu: 2.796 ± 0.044	0.642PheMet: 0.642 ± 0.026	0.964PheAsn: 0.964 ± 0.032	1.465PhePro: 1.465 ± 0.033	0.899PheGln: 0.899 ± 0.027	2.266PheArg: 2.266 ± 0.044	1.969PheSer: 1.969 ± 0.04	2.318PheThr: 2.318 ± 0.046	2.843PheVal: 2.843 ± 0.046	0.404PheTrp: 0.404 ± 0.019	0.716PheTyr: 0.716 ± 0.025	0.0PheXaa: 0.0 ± 0.0
Gly	10.472GlyAla: 10.472 ± 0.1	0.651GlyCys: 0.651 ± 0.026	4.582GlyAsp: 4.582 ± 0.052	4.145GlyGlu: 4.145 ± 0.054	3.016GlyPhe: 3.016 ± 0.054	7.654GlyGly: 7.654 ± 0.109	1.758GlyHis: 1.758 ± 0.034	3.918GlyIle: 3.918 ± 0.059	2.367GlyLys: 2.367 ± 0.042	7.408GlyLeu: 7.408 ± 0.08	2.169GlyMet: 2.169 ± 0.043	2.306GlyAsn: 2.306 ± 0.053	3.349GlyPro: 3.349 ± 0.049	2.816GlyGln: 2.816 ± 0.055	6.288GlyArg: 6.288 ± 0.073	5.062GlySer: 5.062 ± 0.068	5.933GlyThr: 5.933 ± 0.078	7.293GlyVal: 7.293 ± 0.071	1.387GlyTrp: 1.387 ± 0.036	2.084GlyTyr: 2.084 ± 0.045	0.0GlyXaa: 0.0 ± 0.0
His	2.747HisAla: 2.747 ± 0.049	0.202HisCys: 0.202 ± 0.013	1.355HisAsp: 1.355 ± 0.034	1.132HisGlu: 1.132 ± 0.028	0.733HisPhe: 0.733 ± 0.022	2.014HisGly: 2.014 ± 0.043	0.605HisHis: 0.605 ± 0.024	0.805HisIle: 0.805 ± 0.024	0.318HisLys: 0.318 ± 0.016	1.979HisLeu: 1.979 ± 0.035	0.384HisMet: 0.384 ± 0.015	0.427HisAsn: 0.427 ± 0.017	1.281HisPro: 1.281 ± 0.029	0.613HisGln: 0.613 ± 0.021	1.672HisArg: 1.672 ± 0.037	0.922HisSer: 0.922 ± 0.03	1.112HisThr: 1.112 ± 0.03	1.671HisVal: 1.671 ± 0.033	0.331HisTrp: 0.331 ± 0.015	0.473HisTyr: 0.473 ± 0.016	0.0HisXaa: 0.0 ± 0.0
Ile	6.2IleAla: 6.2 ± 0.067	0.263IleCys: 0.263 ± 0.013	3.102IleAsp: 3.102 ± 0.052	2.628IleGlu: 2.628 ± 0.049	1.072IlePhe: 1.072 ± 0.027	4.383IleGly: 4.383 ± 0.067	0.688IleHis: 0.688 ± 0.023	1.533IleIle: 1.533 ± 0.034	0.931IleLys: 0.931 ± 0.029	3.1IleLeu: 3.1 ± 0.06	0.714IleMet: 0.714 ± 0.024	1.098IleAsn: 1.098 ± 0.031	2.316IlePro: 2.316 ± 0.045	0.953IleGln: 0.953 ± 0.028	2.875IleArg: 2.875 ± 0.045	2.282IleSer: 2.282 ± 0.049	3.037IleThr: 3.037 ± 0.043	3.97IleVal: 3.97 ± 0.051	0.426IleTrp: 0.426 ± 0.017	0.766IleTyr: 0.766 ± 0.027	0.0IleXaa: 0.0 ± 0.0
Lys	2.934LysAla: 2.934 ± 0.068	0.106LysCys: 0.106 ± 0.009	1.199LysAsp: 1.199 ± 0.03	1.086LysGlu: 1.086 ± 0.035	0.617LysPhe: 0.617 ± 0.021	1.799LysGly: 1.799 ± 0.036	0.483LysHis: 0.483 ± 0.017	0.936LysIle: 0.936 ± 0.029	0.865LysLys: 0.865 ± 0.042	2.138LysLeu: 2.138 ± 0.046	0.519LysMet: 0.519 ± 0.02	0.597LysAsn: 0.597 ± 0.022	1.447LysPro: 1.447 ± 0.036	0.9LysGln: 0.9 ± 0.027	1.739LysArg: 1.739 ± 0.034	1.236LysSer: 1.236 ± 0.032	1.368LysThr: 1.368 ± 0.031	1.78LysVal: 1.78 ± 0.042	0.29LysTrp: 0.29 ± 0.014	0.571LysTyr: 0.571 ± 0.022	0.0LysXaa: 0.0 ± 0.0
Leu	12.837LeuAla: 12.837 ± 0.126	0.679LeuCys: 0.679 ± 0.023	5.884LeuAsp: 5.884 ± 0.069	5.197LeuGlu: 5.197 ± 0.079	3.021LeuPhe: 3.021 ± 0.049	8.009LeuGly: 8.009 ± 0.081	2.061LeuHis: 2.061 ± 0.041	3.619LeuIle: 3.619 ± 0.049	2.104LeuLys: 2.104 ± 0.048	10.322LeuLeu: 10.322 ± 0.117	1.966LeuMet: 1.966 ± 0.039	2.142LeuAsn: 2.142 ± 0.048	5.651LeuPro: 5.651 ± 0.063	3.503LeuGln: 3.503 ± 0.051	8.423LeuArg: 8.423 ± 0.096	6.094LeuSer: 6.094 ± 0.082	6.298LeuThr: 6.298 ± 0.071	8.239LeuVal: 8.239 ± 0.087	1.235LeuTrp: 1.235 ± 0.037	1.875LeuTyr: 1.875 ± 0.04	0.0LeuXaa: 0.0 ± 0.0
Met	2.805MetAla: 2.805 ± 0.047	0.154MetCys: 0.154 ± 0.01	0.939MetAsp: 0.939 ± 0.024	0.906MetGlu: 0.906 ± 0.025	0.615MetPhe: 0.615 ± 0.02	1.644MetGly: 1.644 ± 0.038	0.528MetHis: 0.528 ± 0.019	0.921MetIle: 0.921 ± 0.026	0.57MetLys: 0.57 ± 0.025	2.38MetLeu: 2.38 ± 0.047	0.528MetMet: 0.528 ± 0.02	0.629MetAsn: 0.629 ± 0.021	1.551MetPro: 1.551 ± 0.034	0.957MetGln: 0.957 ± 0.028	2.04MetArg: 2.04 ± 0.038	1.664MetSer: 1.664 ± 0.037	1.594MetThr: 1.594 ± 0.037	1.656MetVal: 1.656 ± 0.037	0.226MetTrp: 0.226 ± 0.013	0.379MetTyr: 0.379 ± 0.018	0.0MetXaa: 0.0 ± 0.0
Asn	3.271AsnAla: 3.271 ± 0.052	0.182AsnCys: 0.182 ± 0.012	1.408AsnAsp: 1.408 ± 0.034	1.107AsnGlu: 1.107 ± 0.03	0.785AsnPhe: 0.785 ± 0.029	2.533AsnGly: 2.533 ± 0.048	0.426AsnHis: 0.426 ± 0.017	1.06AsnIle: 1.06 ± 0.031	0.504AsnLys: 0.504 ± 0.02	2.076AsnLeu: 2.076 ± 0.047	0.485AsnMet: 0.485 ± 0.019	0.788AsnAsn: 0.788 ± 0.035	1.682AsnPro: 1.682 ± 0.04	0.718AsnGln: 0.718 ± 0.027	1.694AsnArg: 1.694 ± 0.043	1.239AsnSer: 1.239 ± 0.032	1.612AsnThr: 1.612 ± 0.039	2.156AsnVal: 2.156 ± 0.046	0.36AsnTrp: 0.36 ± 0.018	0.597AsnTyr: 0.597 ± 0.023	0.0AsnXaa: 0.0 ± 0.0
Pro	6.955ProAla: 6.955 ± 0.09	0.294ProCys: 0.294 ± 0.014	3.333ProAsp: 3.333 ± 0.052	3.013ProGlu: 3.013 ± 0.048	1.825ProPhe: 1.825 ± 0.04	4.445ProGly: 4.445 ± 0.061	1.146ProHis: 1.146 ± 0.03	2.172ProIle: 2.172 ± 0.041	1.217ProLys: 1.217 ± 0.034	5.074ProLeu: 5.074 ± 0.067	1.389ProMet: 1.389 ± 0.031	1.412ProAsn: 1.412 ± 0.037	2.812ProPro: 2.812 ± 0.069	1.57ProGln: 1.57 ± 0.037	3.75ProArg: 3.75 ± 0.06	3.537ProSer: 3.537 ± 0.052	3.523ProThr: 3.523 ± 0.048	4.635ProVal: 4.635 ± 0.063	0.823ProTrp: 0.823 ± 0.023	1.117ProTyr: 1.117 ± 0.029	0.0ProXaa: 0.0 ± 0.0
Gln	4.164GlnAla: 4.164 ± 0.063	0.228GlnCys: 0.228 ± 0.014	1.39GlnAsp: 1.39 ± 0.031	1.538GlnGlu: 1.538 ± 0.036	1.246GlnPhe: 1.246 ± 0.028	2.552GlnGly: 2.552 ± 0.052	0.853GlnHis: 0.853 ± 0.025	1.463GlnIle: 1.463 ± 0.033	0.743GlnLys: 0.743 ± 0.027	3.791GlnLeu: 3.791 ± 0.055	0.757GlnMet: 0.757 ± 0.026	0.79GlnAsn: 0.79 ± 0.022	1.808GlnPro: 1.808 ± 0.039	1.91GlnGln: 1.91 ± 0.06	3.392GlnArg: 3.392 ± 0.053	1.944GlnSer: 1.944 ± 0.039	1.736GlnThr: 1.736 ± 0.038	2.848GlnVal: 2.848 ± 0.045	0.623GlnTrp: 0.623 ± 0.019	0.804GlnTyr: 0.804 ± 0.021	0.0GlnXaa: 0.0 ± 0.0
Arg	9.808ArgAla: 9.808 ± 0.104	0.541ArgCys: 0.541 ± 0.02	4.767ArgAsp: 4.767 ± 0.064	4.758ArgGlu: 4.758 ± 0.071	2.983ArgPhe: 2.983 ± 0.046	6.064ArgGly: 6.064 ± 0.077	1.67ArgHis: 1.67 ± 0.037	3.798ArgIle: 3.798 ± 0.052	1.633ArgLys: 1.633 ± 0.04	8.092ArgLeu: 8.092 ± 0.084	2.128ArgMet: 2.128 ± 0.038	1.882ArgAsn: 1.882 ± 0.044	3.779ArgPro: 3.779 ± 0.061	2.818ArgGln: 2.818 ± 0.053	6.735ArgArg: 6.735 ± 0.098	4.388ArgSer: 4.388 ± 0.054	4.99ArgThr: 4.99 ± 0.065	6.767ArgVal: 6.767 ± 0.065	1.394ArgTrp: 1.394 ± 0.039	2.052ArgTyr: 2.052 ± 0.032	0.0ArgXaa: 0.0 ± 0.0
Ser	7.792SerAla: 7.792 ± 0.085	0.385SerCys: 0.385 ± 0.017	3.037SerAsp: 3.037 ± 0.055	2.427SerGlu: 2.427 ± 0.047	1.844SerPhe: 1.844 ± 0.035	5.625SerGly: 5.625 ± 0.073	1.126SerHis: 1.126 ± 0.027	2.494SerIle: 2.494 ± 0.039	1.234SerLys: 1.234 ± 0.036	6.051SerLeu: 6.051 ± 0.071	1.432SerMet: 1.432 ± 0.033	1.441SerAsn: 1.441 ± 0.037	3.276SerPro: 3.276 ± 0.041	1.715SerGln: 1.715 ± 0.034	4.353SerArg: 4.353 ± 0.062	3.62SerSer: 3.62 ± 0.059	3.923SerThr: 3.923 ± 0.066	4.906SerVal: 4.906 ± 0.068	0.865SerTrp: 0.865 ± 0.024	1.233SerTyr: 1.233 ± 0.031	0.0SerXaa: 0.0 ± 0.0
Thr	7.503ThrAla: 7.503 ± 0.087	0.376ThrCys: 0.376 ± 0.017	3.116ThrAsp: 3.116 ± 0.043	2.602ThrGlu: 2.602 ± 0.04	2.087ThrPhe: 2.087 ± 0.037	5.494ThrGly: 5.494 ± 0.076	1.219ThrHis: 1.219 ± 0.032	2.962ThrIle: 2.962 ± 0.052	1.349ThrLys: 1.349 ± 0.032	6.798ThrLeu: 6.798 ± 0.079	1.441ThrMet: 1.441 ± 0.034	1.574ThrAsn: 1.574 ± 0.039	4.464ThrPro: 4.464 ± 0.056	1.93ThrGln: 1.93 ± 0.037	4.712ThrArg: 4.712 ± 0.069	3.686ThrSer: 3.686 ± 0.064	4.29ThrThr: 4.29 ± 0.076	5.463ThrVal: 5.463 ± 0.082	0.967ThrTrp: 0.967 ± 0.028	1.299ThrTyr: 1.299 ± 0.04	0.0ThrXaa: 0.0 ± 0.0
Val	10.271ValAla: 10.271 ± 0.101	0.592ValCys: 0.592 ± 0.02	4.562ValAsp: 4.562 ± 0.052	4.17ValGlu: 4.17 ± 0.062	2.476ValPhe: 2.476 ± 0.04	6.391ValGly: 6.391 ± 0.071	1.821ValHis: 1.821 ± 0.034	3.627ValIle: 3.627 ± 0.055	1.887ValLys: 1.887 ± 0.042	8.39ValLeu: 8.39 ± 0.094	1.821ValMet: 1.821 ± 0.036	2.161ValAsn: 2.161 ± 0.041	4.686ValPro: 4.686 ± 0.068	2.984ValGln: 2.984 ± 0.045	7.291ValArg: 7.291 ± 0.071	5.105ValSer: 5.105 ± 0.067	5.327ValThr: 5.327 ± 0.078	7.492ValVal: 7.492 ± 0.092	0.981ValTrp: 0.981 ± 0.027	1.568ValTyr: 1.568 ± 0.036	0.0ValXaa: 0.0 ± 0.0
Trp	1.241TrpAla: 1.241 ± 0.032	0.142TrpCys: 0.142 ± 0.011	0.602TrpAsp: 0.602 ± 0.026	0.569TrpGlu: 0.569 ± 0.023	0.561TrpPhe: 0.561 ± 0.023	1.002TrpGly: 1.002 ± 0.031	0.389TrpHis: 0.389 ± 0.018	0.604TrpIle: 0.604 ± 0.022	0.381TrpLys: 0.381 ± 0.018	1.62TrpLeu: 1.62 ± 0.042	0.407TrpMet: 0.407 ± 0.016	0.464TrpAsn: 0.464 ± 0.017	0.71TrpPro: 0.71 ± 0.024	0.642TrpGln: 0.642 ± 0.025	1.453TrpArg: 1.453 ± 0.037	0.962TrpSer: 0.962 ± 0.029	0.938TrpThr: 0.938 ± 0.031	0.982TrpVal: 0.982 ± 0.029	0.312TrpTrp: 0.312 ± 0.014	0.398TrpTyr: 0.398 ± 0.015	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.494TyrAla: 2.494 ± 0.04	0.173TyrCys: 0.173 ± 0.011	1.302TyrAsp: 1.302 ± 0.034	1.084TyrGlu: 1.084 ± 0.031	0.809TyrPhe: 0.809 ± 0.023	1.917TyrGly: 1.917 ± 0.041	0.464TyrHis: 0.464 ± 0.02	0.741TyrIle: 0.741 ± 0.023	0.45TyrLys: 0.45 ± 0.019	2.037TyrLeu: 2.037 ± 0.038	0.367TyrMet: 0.367 ± 0.017	0.583TyrAsn: 0.583 ± 0.024	1.104TyrPro: 1.104 ± 0.029	0.733TyrGln: 0.733 ± 0.022	1.911TyrArg: 1.911 ± 0.04	1.103TyrSer: 1.103 ± 0.032	1.285TyrThr: 1.285 ± 0.033	1.699TyrVal: 1.699 ± 0.036	0.325TyrTrp: 0.325 ± 0.017	0.523TyrTyr: 0.523 ± 0.021	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 3932 proteins (1419465 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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