Corynebacterium glaucum

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2366 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Q2HTL2|A0A1Q2HTL2_9CORY Integrase core domain protein OS=Corynebacterium glaucum OX=187491 GN=CGLAU_00960 PE=4 SV=1
MM1 pKa = 7.11QKK3 pKa = 10.17SAIWSVVAVAVVTVLVLAGAFVLLRR28 pKa = 11.84GGEE31 pKa = 4.03DD32 pKa = 3.6DD33 pKa = 4.46AASDD37 pKa = 3.88AAPSEE42 pKa = 4.66SAVGPSQITFVPNADD57 pKa = 3.24QRR59 pKa = 11.84ADD61 pKa = 3.64CVAGGVGGIDD71 pKa = 3.85LPCLGGEE78 pKa = 4.3DD79 pKa = 4.36VPGEE83 pKa = 4.16LNDD86 pKa = 3.48ITVVNLWAWWCEE98 pKa = 3.62PCQRR102 pKa = 11.84EE103 pKa = 4.7LPITQALADD112 pKa = 3.78AHH114 pKa = 6.59PEE116 pKa = 3.86YY117 pKa = 11.03SVVGVHH123 pKa = 7.13ADD125 pKa = 3.3ANATNGVAMMNEE137 pKa = 4.23LDD139 pKa = 3.81VSFPSYY145 pKa = 11.02QDD147 pKa = 3.04DD148 pKa = 3.93TNRR151 pKa = 11.84FAGLQGLPGVVPITLVYY168 pKa = 10.38QGGEE172 pKa = 4.03PVGMFPQAFNSLEE185 pKa = 4.03EE186 pKa = 4.35LEE188 pKa = 4.47AAVDD192 pKa = 4.05GALSS196 pKa = 3.32

Molecular weight: 20.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Q2HTU3|A0A1Q2HTU3_9CORY Uncharacterized protein OS=Corynebacterium glaucum OX=187491 GN=CGLAU_01335 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.63KK15 pKa = 9.39KK16 pKa = 9.04HH17 pKa = 5.39RR18 pKa = 11.84KK19 pKa = 5.37MLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2366

0

2366

760833

29

3023

321.6

34.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.091 ± 0.062

0.616 ± 0.013

6.161 ± 0.045

6.684 ± 0.057

3.346 ± 0.027

8.356 ± 0.043

2.035 ± 0.024

4.875 ± 0.04

2.947 ± 0.033

9.364 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.257 ± 0.022

2.851 ± 0.031

5.217 ± 0.042

3.356 ± 0.031

6.214 ± 0.046

5.513 ± 0.033

6.196 ± 0.042

8.272 ± 0.043

1.39 ± 0.024

2.262 ± 0.024
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski