Sida golden yellow spot virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1S6KEF0|A0A1S6KEF0_9GEMI AC4 protein OS=Sida golden yellow spot virus OX=1949198 PE=3 SV=1
MM1 pKa = 7.8DD2 pKa = 4.31QLFCQLEE9 pKa = 4.34GNKK12 pKa = 9.43IEE14 pKa = 4.95PKK16 pKa = 10.37DD17 pKa = 3.66LLPAVSRR24 pKa = 11.84WIVEE28 pKa = 4.01KK29 pKa = 10.28GTAQQFIDD37 pKa = 4.94WINGLQAEE45 pKa = 4.73TKK47 pKa = 10.68GLFHH51 pKa = 7.5ALNAVPDD58 pKa = 4.15GEE60 pKa = 4.88EE61 pKa = 3.79IQTDD65 pKa = 3.58SAEE68 pKa = 4.1VDD70 pKa = 3.56GEE72 pKa = 4.38EE73 pKa = 4.13EE74 pKa = 4.22TEE76 pKa = 4.17LRR78 pKa = 11.84LSQPVRR84 pKa = 11.84ISGTGKK90 pKa = 9.08EE91 pKa = 4.04QGSYY95 pKa = 9.93RR96 pKa = 11.84QIPIDD101 pKa = 3.29

Molecular weight: 11.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1S6KEF2|A0A1S6KEF2_9GEMI Replication-associated protein OS=Sida golden yellow spot virus OX=1949198 PE=3 SV=1
MM1 pKa = 7.6GNLISTCLSNSKK13 pKa = 10.43ASSKK17 pKa = 10.4PRR19 pKa = 11.84IADD22 pKa = 3.24SSTWFPQPGQYY33 pKa = 10.22ISIQTFRR40 pKa = 11.84EE41 pKa = 3.97LNQAQTSRR49 pKa = 11.84PTSRR53 pKa = 11.84RR54 pKa = 11.84TEE56 pKa = 4.05TPSNGEE62 pKa = 3.88NSRR65 pKa = 11.84STQEE69 pKa = 3.71VLEE72 pKa = 4.27EE73 pKa = 3.85VSRR76 pKa = 11.84RR77 pKa = 11.84LTSLTPRR84 pKa = 11.84SS85 pKa = 3.59

Molecular weight: 9.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1075

85

359

179.2

20.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.023 ± 0.616

1.581 ± 0.454

5.116 ± 0.869

5.209 ± 1.697

4.279 ± 0.419

5.674 ± 0.676

2.977 ± 0.778

6.047 ± 0.657

5.674 ± 0.672

7.256 ± 0.34

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.953 ± 0.644

5.488 ± 0.38

5.953 ± 0.641

5.86 ± 0.593

6.605 ± 1.033

9.395 ± 1.351

6.047 ± 0.941

4.837 ± 0.72

1.767 ± 0.103

3.256 ± 0.669
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski