Cognatishimia maritima

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Cognatishimia

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3233 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5TV48|A0A1M5TV48_9RHOB Acyl transferase domain-containing protein OS=Cognatishimia maritima OX=870908 GN=SAMN04488044_2709 PE=3 SV=1
VV1 pKa = 6.71GVSGQDD7 pKa = 3.17ANGTQGVAEE16 pKa = 4.56ALNFGNFDD24 pKa = 4.22NIDD27 pKa = 3.11ITGYY31 pKa = 10.02KK32 pKa = 8.56WADD35 pKa = 3.07INGNGVWDD43 pKa = 4.05EE44 pKa = 4.4GEE46 pKa = 4.02KK47 pKa = 10.91GLNDD51 pKa = 3.2FVIYY55 pKa = 10.64LDD57 pKa = 3.72TDD59 pKa = 3.54EE60 pKa = 6.19DD61 pKa = 3.98PTNGFIRR68 pKa = 11.84MMTTEE73 pKa = 4.12NDD75 pKa = 3.16GTYY78 pKa = 10.85DD79 pKa = 3.37GFYY82 pKa = 10.31SFQDD86 pKa = 3.39VTPAEE91 pKa = 4.35INGATTLYY99 pKa = 10.15VYY101 pKa = 10.61EE102 pKa = 4.49GVEE105 pKa = 3.74PGYY108 pKa = 7.75TQTYY112 pKa = 8.03GGYY115 pKa = 9.9SIDD118 pKa = 3.78VASGAVVEE126 pKa = 4.46GTYY129 pKa = 10.35RR130 pKa = 11.84EE131 pKa = 4.27TEE133 pKa = 4.06DD134 pKa = 4.34GNFGNHH140 pKa = 5.17MMEE143 pKa = 4.79GANRR147 pKa = 11.84TPGFWQSTLGKK158 pKa = 9.55SLYY161 pKa = 10.89DD162 pKa = 3.95GDD164 pKa = 5.23PDD166 pKa = 4.05NQGDD170 pKa = 4.1ANGDD174 pKa = 3.99GIPDD178 pKa = 3.59GNKK181 pKa = 10.22DD182 pKa = 3.54FEE184 pKa = 4.48EE185 pKa = 4.62EE186 pKa = 4.25GWSEE190 pKa = 3.84EE191 pKa = 4.19DD192 pKa = 4.21LLIKK196 pKa = 10.7YY197 pKa = 10.13GIDD200 pKa = 3.45LEE202 pKa = 5.29GGDD205 pKa = 5.05GINDD209 pKa = 3.66HH210 pKa = 6.44FLVWDD215 pKa = 3.81EE216 pKa = 4.54NGNGVLDD223 pKa = 4.43GDD225 pKa = 5.09DD226 pKa = 3.12IALTFEE232 pKa = 4.61EE233 pKa = 4.45LCGWVEE239 pKa = 4.11GGGTGKK245 pKa = 9.95RR246 pKa = 11.84DD247 pKa = 3.6YY248 pKa = 11.69VEE250 pKa = 3.93VLQRR254 pKa = 11.84DD255 pKa = 3.63VGATFLNLLNNSSLAGSDD273 pKa = 3.66DD274 pKa = 4.04VIMDD278 pKa = 3.66GDD280 pKa = 3.86IEE282 pKa = 4.45DD283 pKa = 4.17SYY285 pKa = 11.37EE286 pKa = 3.8AAIMFIMDD294 pKa = 3.72NEE296 pKa = 4.35MKK298 pKa = 10.46GSKK301 pKa = 10.06KK302 pKa = 10.59AMQKK306 pKa = 9.91DD307 pKa = 3.08WKK309 pKa = 10.28DD310 pKa = 3.65YY311 pKa = 11.03GSAAHH316 pKa = 6.7NEE318 pKa = 3.28LDD320 pKa = 3.53AYY322 pKa = 10.82NNNGQVFDD330 pKa = 4.5AEE332 pKa = 4.52SGTFVQTVMDD342 pKa = 5.07GDD344 pKa = 4.36DD345 pKa = 4.22LSKK348 pKa = 9.8QTAQNYY354 pKa = 9.34FDD356 pKa = 5.76AEE358 pKa = 3.91DD359 pKa = 4.06AYY361 pKa = 10.54EE362 pKa = 4.28LFVAA366 pKa = 5.48

Molecular weight: 39.9 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5MMS6|A0A1M5MMS6_9RHOB 30S ribosomal protein S13 OS=Cognatishimia maritima OX=870908 GN=rpsM PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.31QPSNLVRR12 pKa = 11.84KK13 pKa = 9.18RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.42GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 8.97ALSAA44 pKa = 4.07

Molecular weight: 5.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3233

0

3233

981079

18

2133

303.5

33.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.526 ± 0.048

0.919 ± 0.014

6.125 ± 0.035

6.123 ± 0.043

3.94 ± 0.031

8.219 ± 0.044

2.077 ± 0.022

5.487 ± 0.033

3.91 ± 0.036

9.908 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.843 ± 0.02

2.905 ± 0.022

4.753 ± 0.028

3.44 ± 0.026

6.049 ± 0.037

5.375 ± 0.027

5.441 ± 0.025

7.289 ± 0.032

1.363 ± 0.018

2.306 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski