Dahlia mosaic virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus

Average proteome isoelectric point is 7.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q7THB7|Q7THB7_9VIRU Aphid transmission protein OS=Dahlia mosaic virus OX=213888 PE=3 SV=1
MM1 pKa = 6.94TTIKK5 pKa = 10.69DD6 pKa = 3.39LAALIEE12 pKa = 4.16GLRR15 pKa = 11.84EE16 pKa = 4.1EE17 pKa = 4.11ISKK20 pKa = 10.81LKK22 pKa = 11.11AEE24 pKa = 4.42ITSKK28 pKa = 10.28DD29 pKa = 3.25TGPTDD34 pKa = 3.46NTALEE39 pKa = 4.18SLGAKK44 pKa = 9.65IIKK47 pKa = 9.47EE48 pKa = 4.26LSDD51 pKa = 4.32KK52 pKa = 10.16MDD54 pKa = 3.27KK55 pKa = 11.11CEE57 pKa = 3.9CTEE60 pKa = 3.91RR61 pKa = 11.84LKK63 pKa = 11.13KK64 pKa = 10.01EE65 pKa = 4.06LQEE68 pKa = 4.11QPDD71 pKa = 3.52KK72 pKa = 11.32GKK74 pKa = 10.8QIVSPDD80 pKa = 3.51KK81 pKa = 10.96QEE83 pKa = 4.09SSTPSSNFTRR93 pKa = 11.84YY94 pKa = 9.74SYY96 pKa = 10.92PNWNVGNASLGSSGNPDD113 pKa = 3.37ALKK116 pKa = 10.07WPPVV120 pKa = 3.35

Molecular weight: 13.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q7TDA0|Q7TDA0_9VIRU Inclusion body matrix protein OS=Dahlia mosaic virus OX=213888 GN=VI PE=3 SV=1
MM1 pKa = 7.5GIKK4 pKa = 9.14YY5 pKa = 8.32TMSMHH10 pKa = 5.13QQQLKK15 pKa = 10.86ADD17 pKa = 4.42LKK19 pKa = 10.59QINSEE24 pKa = 4.04IIYY27 pKa = 10.06VNQQIKK33 pKa = 10.19IIKK36 pKa = 9.07QNPKK40 pKa = 10.47GNMFSSRR47 pKa = 11.84VKK49 pKa = 10.21SLRR52 pKa = 11.84INSLKK57 pKa = 10.71ADD59 pKa = 3.78LTNLFKK65 pKa = 10.54QRR67 pKa = 11.84KK68 pKa = 7.82LLEE71 pKa = 4.34AQIHH75 pKa = 5.2

Molecular weight: 8.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2325

38

609

290.6

33.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.473 ± 0.53

1.892 ± 0.3

5.849 ± 0.519

7.656 ± 0.558

3.828 ± 0.278

4.172 ± 0.379

1.849 ± 0.266

7.613 ± 0.628

10.581 ± 0.767

8.602 ± 0.579

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.892 ± 0.283

5.591 ± 0.327

4.516 ± 0.504

5.376 ± 0.622

3.957 ± 0.251

7.871 ± 0.915

5.376 ± 0.465

4.688 ± 0.501

1.032 ± 0.15

3.183 ± 0.285
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski