Myroides indicus

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2689 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R7ETI3|A0A4R7ETI3_9FLAO Cell division protein FtsA OS=Myroides indicus OX=1323422 GN=ftsA PE=3 SV=1
MM1 pKa = 7.9KK2 pKa = 10.18YY3 pKa = 10.7FKK5 pKa = 10.32FLSVFALFGALFLTSCSTDD24 pKa = 3.75DD25 pKa = 5.75KK26 pKa = 10.97DD27 pKa = 4.55TQPTDD32 pKa = 3.29QQIEE36 pKa = 4.37NKK38 pKa = 10.41SFFHH42 pKa = 7.68DD43 pKa = 4.33LFHH46 pKa = 8.06PDD48 pKa = 3.25GLQSNSRR55 pKa = 11.84YY56 pKa = 5.3TTFAAGDD63 pKa = 3.6YY64 pKa = 10.34AGTYY68 pKa = 8.2TGTYY72 pKa = 9.42VINSMLAGSGPGDD85 pKa = 3.6YY86 pKa = 10.97DD87 pKa = 3.73DD88 pKa = 6.35VEE90 pKa = 4.9DD91 pKa = 4.38KK92 pKa = 11.26SITITVNEE100 pKa = 4.19TAQTIDD106 pKa = 4.66LEE108 pKa = 4.23IEE110 pKa = 4.05PFKK113 pKa = 10.85VGSMPANINIEE124 pKa = 4.39MYY126 pKa = 10.3SIPYY130 pKa = 8.81TEE132 pKa = 4.54TGNTVHH138 pKa = 6.71FQGTEE143 pKa = 3.91TNGFSVMGVYY153 pKa = 10.46SDD155 pKa = 3.88IDD157 pKa = 3.5VDD159 pKa = 3.95GTITKK164 pKa = 10.47SGTTYY169 pKa = 10.8TMALNFLANGSWGSMIINADD189 pKa = 3.08VDD191 pKa = 4.26FTGTKK196 pKa = 9.97

Molecular weight: 21.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V3E842|A0A4V3E842_9FLAO RHS repeat-associated protein OS=Myroides indicus OX=1323422 GN=C8P70_11740 PE=4 SV=1
MM1 pKa = 7.36LRR3 pKa = 11.84HH4 pKa = 5.93EE5 pKa = 4.48GRR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84TFFHH13 pKa = 6.02NLKK16 pKa = 9.9LASILSTVAGIVNIVGVLSVKK37 pKa = 10.45VLTTNVTGHH46 pKa = 6.39FAFFSEE52 pKa = 4.16EE53 pKa = 4.46LFFKK57 pKa = 10.45DD58 pKa = 3.54YY59 pKa = 11.42SLAGLFLIYY68 pKa = 10.18IFSFLGGAFISSLLMDD84 pKa = 3.99FSKK87 pKa = 10.9RR88 pKa = 11.84IRR90 pKa = 11.84FRR92 pKa = 11.84STYY95 pKa = 8.86ILPVFLEE102 pKa = 3.79ITLFILVMVCSLFYY116 pKa = 10.63TGVDD120 pKa = 3.29QAIASMLLFAMGLQNALVTRR140 pKa = 11.84VSQSVVRR147 pKa = 11.84TTHH150 pKa = 5.1LTGLFTDD157 pKa = 4.66LGIEE161 pKa = 4.21LSFLFFKK168 pKa = 10.2QHH170 pKa = 4.35YY171 pKa = 8.36KK172 pKa = 10.29KK173 pKa = 10.43RR174 pKa = 11.84SLRR177 pKa = 11.84RR178 pKa = 11.84SIGLKK183 pKa = 9.72ISIIGGFFLGCILGGFVYY201 pKa = 10.08QQLEE205 pKa = 4.45IYY207 pKa = 9.77TLFIPVALLLFALWYY222 pKa = 10.16DD223 pKa = 3.55RR224 pKa = 11.84LIFKK228 pKa = 9.92YY229 pKa = 10.69LILRR233 pKa = 11.84RR234 pKa = 11.84KK235 pKa = 10.2LIAQRR240 pKa = 11.84RR241 pKa = 11.84NILKK245 pKa = 10.29LRR247 pKa = 3.89

Molecular weight: 28.39 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2689

0

2689

898407

26

3563

334.1

37.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.078 ± 0.05

0.815 ± 0.02

5.362 ± 0.035

6.873 ± 0.056

5.203 ± 0.038

6.245 ± 0.047

1.712 ± 0.021

8.242 ± 0.045

7.898 ± 0.057

9.236 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.231 ± 0.026

6.092 ± 0.044

3.248 ± 0.029

3.687 ± 0.031

3.355 ± 0.033

6.413 ± 0.048

5.671 ± 0.055

6.152 ± 0.04

1.043 ± 0.02

4.446 ± 0.042
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski