Circovirus-like genome DCCV-6

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; unclassified Circoviridae

Average proteome isoelectric point is 8.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A190WHB0|A0A190WHB0_9CIRC Uncharacterized protein OS=Circovirus-like genome DCCV-6 OX=1788446 PE=4 SV=1
MM1 pKa = 7.36TGCPPQDD8 pKa = 3.18VKK10 pKa = 11.37ALSGSGRR17 pKa = 11.84SQLISGDD24 pKa = 3.58PLYY27 pKa = 10.46TPKK30 pKa = 10.82SPTLRR35 pKa = 11.84DD36 pKa = 3.31RR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 10.5VGLTLDD45 pKa = 3.56TCIGRR50 pKa = 11.84SSSTSKK56 pKa = 10.8RR57 pKa = 11.84KK58 pKa = 10.19DD59 pKa = 3.26PLPLSRR65 pKa = 11.84HH66 pKa = 5.62AFLQRR71 pKa = 11.84VTMNSPDD78 pKa = 3.78QLPLKK83 pKa = 10.75SMSLKK88 pKa = 9.63RR89 pKa = 11.84TLEE92 pKa = 4.03SQTLSSSSEE101 pKa = 4.21SNLSCEE107 pKa = 4.18AEE109 pKa = 4.09KK110 pKa = 10.85QIGMKK115 pKa = 10.08SGMLQEE121 pKa = 5.87AEE123 pKa = 4.41TSWLSLPMYY132 pKa = 9.88EE133 pKa = 4.61VLNFNQSNVILTSEE147 pKa = 4.35EE148 pKa = 3.82FAQILPNLSQWNVRR162 pKa = 11.84FTYY165 pKa = 10.32FGEE168 pKa = 4.18IPVLEE173 pKa = 4.45NPAGLGMRR181 pKa = 11.84RR182 pKa = 11.84VSALTLKK189 pKa = 10.89VPVQNSGMVTKK200 pKa = 10.29IKK202 pKa = 10.77KK203 pKa = 8.7MLLSMSLEE211 pKa = 4.09EE212 pKa = 4.19TSVILINKK220 pKa = 9.53ASLTCSDD227 pKa = 3.81GWTDD231 pKa = 2.92IPFWSRR237 pKa = 11.84QKK239 pKa = 11.08DD240 pKa = 3.34QGSYY244 pKa = 10.92CLLAEE249 pKa = 4.41SGSRR253 pKa = 11.84VTSRR257 pKa = 11.84LPTGILLWMRR267 pKa = 11.84TLPLLCCEE275 pKa = 4.65DD276 pKa = 3.51

Molecular weight: 30.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A190WHC4|A0A190WHC4_9CIRC Viral_Rep domain-containing protein OS=Circovirus-like genome DCCV-6 OX=1788446 PE=4 SV=1
MM1 pKa = 7.24SVSRR5 pKa = 11.84TPRR8 pKa = 11.84SYY10 pKa = 11.28GGQTLVGSRR19 pKa = 11.84SRR21 pKa = 11.84GLFRR25 pKa = 11.84NTHH28 pKa = 5.38NLAVGYY34 pKa = 9.5GSRR37 pKa = 11.84LLSAGIKK44 pKa = 10.14RR45 pKa = 11.84GAQHH49 pKa = 7.29LMTKK53 pKa = 8.21ITKK56 pKa = 9.36KK57 pKa = 10.53AKK59 pKa = 9.73KK60 pKa = 9.91ALAKK64 pKa = 10.53KK65 pKa = 7.52PTGYY69 pKa = 10.85NEE71 pKa = 3.65VSRR74 pKa = 11.84SDD76 pKa = 3.27RR77 pKa = 11.84AAKK80 pKa = 10.02VINRR84 pKa = 11.84YY85 pKa = 7.78NKK87 pKa = 9.35KK88 pKa = 10.34VSVKK92 pKa = 9.74KK93 pKa = 8.45PQRR96 pKa = 11.84VKK98 pKa = 10.65VSRR101 pKa = 11.84KK102 pKa = 9.05FKK104 pKa = 10.87AKK106 pKa = 10.03VNKK109 pKa = 10.08ALEE112 pKa = 4.24PQMSKK117 pKa = 10.6GKK119 pKa = 10.47YY120 pKa = 8.54EE121 pKa = 3.92EE122 pKa = 4.31TSVFRR127 pKa = 11.84QNFGIAFGNKK137 pKa = 8.89QISGRR142 pKa = 11.84LAPDD146 pKa = 3.5TGAGSRR152 pKa = 11.84HH153 pKa = 5.91ALFGPAEE160 pKa = 4.18ILDD163 pKa = 3.95KK164 pKa = 11.18ASCLFNNRR172 pKa = 11.84VAGQTVATQTGNDD185 pKa = 3.73TNFGNASLDD194 pKa = 3.32PRR196 pKa = 11.84TAKK199 pKa = 9.03ITVNYY204 pKa = 10.14QKK206 pKa = 10.58YY207 pKa = 8.92QCTLRR212 pKa = 11.84NNSQRR217 pKa = 11.84TWIIQIYY224 pKa = 7.85EE225 pKa = 4.05ASPKK229 pKa = 10.9RR230 pKa = 11.84MMNVCADD237 pKa = 4.04ADD239 pKa = 3.91VLSQWEE245 pKa = 4.08SAMINEE251 pKa = 4.73FNNDD255 pKa = 3.13AGNAEE260 pKa = 4.23LKK262 pKa = 10.55KK263 pKa = 10.67INLANATPNTLYY275 pKa = 9.38ATPFMSKK282 pKa = 10.52AFMKK286 pKa = 10.24DD287 pKa = 2.86WNIEE291 pKa = 3.8KK292 pKa = 10.13HH293 pKa = 7.13DD294 pKa = 4.86IILDD298 pKa = 3.73PGQVYY303 pKa = 10.37DD304 pKa = 3.86HH305 pKa = 6.58VMYY308 pKa = 10.77GPTGTYY314 pKa = 10.44DD315 pKa = 3.66FSKK318 pKa = 10.04FWRR321 pKa = 11.84SDD323 pKa = 2.95GVGASNEE330 pKa = 4.2FYY332 pKa = 11.03NLQPKK337 pKa = 7.5FTRR340 pKa = 11.84EE341 pKa = 3.63LFYY344 pKa = 10.01TARR347 pKa = 11.84LDD349 pKa = 4.21LCATDD354 pKa = 3.65TGAVGRR360 pKa = 11.84WGINDD365 pKa = 3.53TTTGLIHH372 pKa = 7.12EE373 pKa = 4.46MTKK376 pKa = 8.92TCSISVPQQAGGVLTEE392 pKa = 4.38TGGLTAFRR400 pKa = 11.84NTQQRR405 pKa = 11.84DD406 pKa = 3.57AYY408 pKa = 9.98IKK410 pKa = 10.18IHH412 pKa = 5.5WNEE415 pKa = 3.64NATAVPTVRR424 pKa = 11.84VDD426 pKa = 3.24VQTAGDD432 pKa = 3.72NLL434 pKa = 3.87

Molecular weight: 48.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

870

160

434

290.0

32.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.356 ± 1.677

1.609 ± 0.388

4.368 ± 0.292

4.483 ± 0.656

3.793 ± 0.681

7.126 ± 0.57

1.264 ± 0.359

4.483 ± 0.195

7.011 ± 0.672

8.391 ± 2.279

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.874 ± 0.471

5.287 ± 1.324

4.598 ± 0.788

4.368 ± 0.278

6.207 ± 0.177

8.391 ± 2.153

7.586 ± 0.618

5.862 ± 0.475

1.954 ± 0.443

2.989 ± 0.603
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski