Tenacibaculum holothuriorum

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Tenacibaculum

Average proteome isoelectric point is 6.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2802 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Y2PD47|A0A1Y2PD47_9FLAO Uncharacterized protein (Fragment) OS=Tenacibaculum holothuriorum OX=1635173 GN=WH52_09165 PE=4 SV=1
MM1 pKa = 7.4EE2 pKa = 4.33VDD4 pKa = 3.31INIKK8 pKa = 10.12IKK10 pKa = 10.62DD11 pKa = 3.45RR12 pKa = 11.84AGIIHH17 pKa = 6.6EE18 pKa = 4.57VVAPTDD24 pKa = 3.24MAMNLMEE31 pKa = 4.24VVKK34 pKa = 10.34SYY36 pKa = 11.15EE37 pKa = 3.94LAPEE41 pKa = 4.21GTIGICGGMAMCASCQCYY59 pKa = 9.39VVSNHH64 pKa = 6.0EE65 pKa = 4.42LPEE68 pKa = 4.26KK69 pKa = 10.31TDD71 pKa = 4.78DD72 pKa = 3.82EE73 pKa = 4.71DD74 pKa = 6.05AMLAEE79 pKa = 4.55AFDD82 pKa = 3.76VQEE85 pKa = 4.1NSRR88 pKa = 11.84LGCQIQMTPEE98 pKa = 4.13CEE100 pKa = 4.05GLEE103 pKa = 4.11VEE105 pKa = 5.32LAPEE109 pKa = 4.07SS110 pKa = 3.78

Molecular weight: 12.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Y2PDL6|A0A1Y2PDL6_9FLAO 3-demethylubiquinone-9 3-methyltransferase OS=Tenacibaculum holothuriorum OX=1635173 GN=WH52_05740 PE=4 SV=1
MM1 pKa = 7.38KK2 pKa = 10.14FIHH5 pKa = 5.76SVRR8 pKa = 11.84HH9 pKa = 4.19FFEE12 pKa = 3.9RR13 pKa = 11.84HH14 pKa = 4.43GFNVSSRR21 pKa = 11.84FADD24 pKa = 3.65RR25 pKa = 11.84LGMRR29 pKa = 11.84ATNVRR34 pKa = 11.84LFFIYY39 pKa = 10.25ISFVTVGLSFGLYY52 pKa = 8.31LTLAFLLRR60 pKa = 11.84LKK62 pKa = 11.19DD63 pKa = 3.26MVYY66 pKa = 10.16TKK68 pKa = 9.81RR69 pKa = 11.84TSVFDD74 pKa = 3.66LL75 pKa = 4.18

Molecular weight: 8.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2802

0

2802

936333

48

2398

334.2

37.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.995 ± 0.051

0.683 ± 0.015

5.212 ± 0.036

6.697 ± 0.048

5.344 ± 0.041

6.153 ± 0.05

1.725 ± 0.017

8.064 ± 0.042

8.776 ± 0.067

9.211 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.028 ± 0.025

6.652 ± 0.058

3.165 ± 0.025

3.38 ± 0.025

3.284 ± 0.03

6.382 ± 0.04

5.916 ± 0.052

6.295 ± 0.035

0.992 ± 0.014

4.047 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski