Hubei permutotetra-like virus 11

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 7.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|A0A1L3KHV9|A0A1L3KHV9_9VIRU RdRp OS=Hubei permutotetra-like virus 11 OX=1923075 PE=4 SV=1
MM1 pKa = 7.87DD2 pKa = 5.59ASNPVISSDD11 pKa = 3.07RR12 pKa = 11.84ATIQSQLEE20 pKa = 4.24KK21 pKa = 10.89VRR23 pKa = 11.84GTRR26 pKa = 11.84RR27 pKa = 11.84QDD29 pKa = 3.01LGYY32 pKa = 10.39LQGLASTTQRR42 pKa = 11.84IQLPTNINIPLLEE55 pKa = 3.86RR56 pKa = 11.84TGIVEE61 pKa = 3.88KK62 pKa = 10.87FKK64 pKa = 10.57TNRR67 pKa = 11.84PEE69 pKa = 3.86VPTTKK74 pKa = 10.51DD75 pKa = 2.78IPLDD79 pKa = 3.66DD80 pKa = 5.32KK81 pKa = 11.54IFMVEE86 pKa = 3.97LNEE89 pKa = 4.53CPVSGILNSNSLPLHH104 pKa = 6.02PSGVNCLGGKK114 pKa = 9.94VNVQRR119 pKa = 11.84KK120 pKa = 9.07VGGIPTAPFGLGDD133 pKa = 3.85IVAVIGDD140 pKa = 3.78DD141 pKa = 3.73VLNTKK146 pKa = 9.62HH147 pKa = 6.52VYY149 pKa = 9.34TSGTWSGFVKK159 pKa = 10.61RR160 pKa = 11.84LNQQMGRR167 pKa = 11.84KK168 pKa = 6.79TVSLRR173 pKa = 11.84KK174 pKa = 8.56TMGNMGKK181 pKa = 9.31EE182 pKa = 4.08LSYY185 pKa = 10.82DD186 pKa = 3.33ACLKK190 pKa = 10.93LLDD193 pKa = 4.48KK194 pKa = 11.2YY195 pKa = 10.35MPRR198 pKa = 11.84KK199 pKa = 9.31PNYY202 pKa = 8.86DD203 pKa = 2.74WPGRR207 pKa = 11.84NEE209 pKa = 3.83ANFYY213 pKa = 11.14EE214 pKa = 4.92DD215 pKa = 3.77LTTKK219 pKa = 10.36IKK221 pKa = 10.06VTMNSSAGAPYY232 pKa = 9.06WRR234 pKa = 11.84NKK236 pKa = 8.5SEE238 pKa = 3.95CMEE241 pKa = 5.17DD242 pKa = 3.5IIDD245 pKa = 3.71VGIPLIVKK253 pKa = 9.89AIKK256 pKa = 10.21EE257 pKa = 3.93NSLDD261 pKa = 3.53KK262 pKa = 11.06LYY264 pKa = 10.55MEE266 pKa = 4.61NPEE269 pKa = 4.11MFLCEE274 pKa = 4.4VKK276 pKa = 10.93NKK278 pKa = 7.46TDD280 pKa = 3.15RR281 pKa = 11.84YY282 pKa = 9.33EE283 pKa = 3.91VSKK286 pKa = 11.19LKK288 pKa = 10.91DD289 pKa = 2.85KK290 pKa = 9.98TRR292 pKa = 11.84PYY294 pKa = 9.81TCVPAHH300 pKa = 6.06WAFLFSMLTQGFQEE314 pKa = 4.2TLLTFDD320 pKa = 4.55QDD322 pKa = 3.8PSSSNAYY329 pKa = 9.88GFSSSNGGLKK339 pKa = 10.48RR340 pKa = 11.84MVEE343 pKa = 3.77WMYY346 pKa = 10.09TADD349 pKa = 3.65RR350 pKa = 11.84RR351 pKa = 11.84GKK353 pKa = 8.35VVCYY357 pKa = 10.56GDD359 pKa = 3.91DD360 pKa = 3.3ACIVIKK366 pKa = 10.68KK367 pKa = 9.45GDD369 pKa = 3.66KK370 pKa = 9.88IYY372 pKa = 10.82RR373 pKa = 11.84IDD375 pKa = 3.99PDD377 pKa = 4.55FKK379 pKa = 11.53QMDD382 pKa = 3.82GSLSQEE388 pKa = 4.41DD389 pKa = 3.64IEE391 pKa = 5.04LTVKK395 pKa = 9.68WVMAHH400 pKa = 5.89FEE402 pKa = 4.11KK403 pKa = 11.0DD404 pKa = 2.91AGKK407 pKa = 10.42QSLFWRR413 pKa = 11.84AVAGVWALMSHH424 pKa = 6.02NPVFVIDD431 pKa = 4.17GKK433 pKa = 8.28TVYY436 pKa = 10.22RR437 pKa = 11.84KK438 pKa = 9.95RR439 pKa = 11.84NPSGLMTGVPGTTLFDD455 pKa = 3.7TVKK458 pKa = 10.97SVMVWNKK465 pKa = 10.32LLDD468 pKa = 3.59VCATGQGDD476 pKa = 3.7ILDD479 pKa = 4.48EE480 pKa = 4.22KK481 pKa = 10.75WVTNWMLQNGLVVKK495 pKa = 10.43EE496 pKa = 4.43GTWKK500 pKa = 10.47PEE502 pKa = 3.96EE503 pKa = 4.24LPKK506 pKa = 10.78QLDD509 pKa = 3.37HH510 pKa = 6.98GDD512 pKa = 3.42LVTTHH517 pKa = 7.02KK518 pKa = 10.74FLGVQIKK525 pKa = 10.23KK526 pKa = 10.23IIWKK530 pKa = 8.68GTEE533 pKa = 3.87QFVPTIPYY541 pKa = 9.2EE542 pKa = 4.31DD543 pKa = 3.87AVEE546 pKa = 3.94MLVIQKK552 pKa = 10.37DD553 pKa = 4.2DD554 pKa = 3.43PWPTNKK560 pKa = 9.44VSNTMKK566 pKa = 10.62ARR568 pKa = 11.84TLFDD572 pKa = 3.36RR573 pKa = 11.84MRR575 pKa = 11.84GLMITMGFNHH585 pKa = 7.12PAIVDD590 pKa = 4.42CIHH593 pKa = 6.41NVVNNLPPEE602 pKa = 4.52VILMQVQNGVGEE614 pKa = 4.4KK615 pKa = 9.32PDD617 pKa = 4.86HH618 pKa = 6.16ITLQEE623 pKa = 3.78FNYY626 pKa = 9.17PDD628 pKa = 3.39SSGFPSVDD636 pKa = 3.73FCISVYY642 pKa = 11.23ADD644 pKa = 3.24GTYY647 pKa = 10.56DD648 pKa = 3.71EE649 pKa = 4.9PWIKK653 pKa = 10.6LFPNLDD659 pKa = 3.77DD660 pKa = 5.47KK661 pKa = 11.46ISAFKK666 pKa = 10.51EE667 pKa = 3.79QIKK670 pKa = 10.4QMEE673 pKa = 4.2RR674 pKa = 11.84KK675 pKa = 9.13YY676 pKa = 10.92RR677 pKa = 11.84EE678 pKa = 3.92LLGVQDD684 pKa = 3.83PQYY687 pKa = 11.64VEE689 pKa = 5.61IEE691 pKa = 4.29DD692 pKa = 3.91KK693 pKa = 10.87PLNQEE698 pKa = 4.04YY699 pKa = 10.74QLVEE703 pKa = 3.86AKK705 pKa = 10.11TPVKK709 pKa = 9.9PPKK712 pKa = 10.05FEE714 pKa = 4.45SVNKK718 pKa = 9.63RR719 pKa = 11.84SKK721 pKa = 9.52VCEE724 pKa = 3.85VHH726 pKa = 7.63DD727 pKa = 5.96DD728 pKa = 4.43RR729 pKa = 11.84IQDD732 pKa = 3.25RR733 pKa = 11.84KK734 pKa = 10.28YY735 pKa = 11.06VPNLGQSVRR744 pKa = 11.84IFLQKK749 pKa = 10.72GYY751 pKa = 10.34GLAPVGVVAAGLGVSARR768 pKa = 11.84RR769 pKa = 11.84LYY771 pKa = 10.8RR772 pKa = 11.84EE773 pKa = 3.81ASNWGYY779 pKa = 11.65YY780 pKa = 5.82MTGWTVDD787 pKa = 4.53DD788 pKa = 3.92ICSLRR793 pKa = 11.84PIITAFKK800 pKa = 8.78THH802 pKa = 6.19QEE804 pKa = 4.27DD805 pKa = 4.09IFDD808 pKa = 4.21DD809 pKa = 4.02MEE811 pKa = 4.49GKK813 pKa = 8.26KK814 pKa = 8.44TLINKK819 pKa = 7.42STEE822 pKa = 3.41IRR824 pKa = 11.84QEE826 pKa = 3.95SLQKK830 pKa = 10.13SGEE833 pKa = 4.4VVRR836 pKa = 11.84SAPDD840 pKa = 3.31LVLLRR845 pKa = 11.84KK846 pKa = 10.24DD847 pKa = 2.9ILLFNQSAPVSQVDD861 pKa = 3.56NADD864 pKa = 3.54EE865 pKa = 4.14AFKK868 pKa = 10.7ILNLMVSRR876 pKa = 11.84EE877 pKa = 3.81GLQYY881 pKa = 11.02TFTTKK886 pKa = 9.9VDD888 pKa = 3.35ATKK891 pKa = 10.28VNSVGVVMVARR902 pKa = 11.84HH903 pKa = 5.8SSTGVPSGWTPVAEE917 pKa = 3.91AWSLNKK923 pKa = 10.04KK924 pKa = 8.68LAKK927 pKa = 10.13EE928 pKa = 4.52FIARR932 pKa = 11.84SILEE936 pKa = 4.03MNGIEE941 pKa = 4.16CEE943 pKa = 3.85EE944 pKa = 4.5SKK946 pKa = 11.03FSVTYY951 pKa = 9.66VPPILEE957 pKa = 4.51EE958 pKa = 4.06SLNWADD964 pKa = 3.65EE965 pKa = 4.42VEE967 pKa = 4.43NTFNPRR973 pKa = 11.84QIPRR977 pKa = 11.84VIDD980 pKa = 3.67EE981 pKa = 4.61KK982 pKa = 11.25NSNVLPDD989 pKa = 3.74LDD991 pKa = 4.21VYY993 pKa = 11.17QEE995 pKa = 4.13LEE997 pKa = 3.9KK998 pKa = 10.84LRR1000 pKa = 11.84PYY1002 pKa = 10.17IPKK1005 pKa = 10.16KK1006 pKa = 9.38FLGYY1010 pKa = 10.61AEE1012 pKa = 4.39SLFVKK1017 pKa = 9.95PNPQEE1022 pKa = 3.89HH1023 pKa = 6.45LKK1025 pKa = 10.81AALEE1029 pKa = 3.99MLDD1032 pKa = 3.84KK1033 pKa = 10.31IDD1035 pKa = 3.72RR1036 pKa = 11.84QVHH1039 pKa = 5.42HH1040 pKa = 7.03WSSSDD1045 pKa = 3.16SDD1047 pKa = 3.76TSGVGSSSPSTPSKK1061 pKa = 10.46RR1062 pKa = 11.84SRR1064 pKa = 11.84LTPARR1069 pKa = 11.84RR1070 pKa = 11.84TKK1072 pKa = 10.81LNRR1075 pKa = 11.84KK1076 pKa = 6.29LTEE1079 pKa = 3.29RR1080 pKa = 11.84RR1081 pKa = 11.84RR1082 pKa = 11.84RR1083 pKa = 11.84KK1084 pKa = 9.55KK1085 pKa = 10.56ASSTTKK1091 pKa = 10.12PP1092 pKa = 3.18

Molecular weight:
123.56 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|A0A1L3KHV9|A0A1L3KHV9_9VIRU RdRp OS=Hubei permutotetra-like virus 11 OX=1923075 PE=4 SV=1
MM1 pKa = 6.97VGSVEE6 pKa = 5.12CEE8 pKa = 3.8YY9 pKa = 10.96CKK11 pKa = 10.79KK12 pKa = 10.45KK13 pKa = 10.78FKK15 pKa = 10.77SKK17 pKa = 9.95RR18 pKa = 11.84AKK20 pKa = 8.4NQHH23 pKa = 4.69VSMVHH28 pKa = 6.94KK29 pKa = 10.14INEE32 pKa = 4.1KK33 pKa = 8.71MAPPAVAKK41 pKa = 9.73TGRR44 pKa = 11.84TRR46 pKa = 11.84GSLRR50 pKa = 11.84LRR52 pKa = 11.84RR53 pKa = 11.84TRR55 pKa = 11.84TSNLPGFDD63 pKa = 3.31IAPSRR68 pKa = 11.84VPTVRR73 pKa = 11.84GGMINISGEE82 pKa = 3.97DD83 pKa = 3.28RR84 pKa = 11.84IGAFDD89 pKa = 4.46LKK91 pKa = 10.72SGKK94 pKa = 10.05AVFMSVDD101 pKa = 3.57ISPSMSARR109 pKa = 11.84LTTIARR115 pKa = 11.84AYY117 pKa = 10.39QRR119 pKa = 11.84IKK121 pKa = 9.44WNAVKK126 pKa = 10.35IVVTPQASAMTNGGYY141 pKa = 10.01VCGFIADD148 pKa = 3.86PSDD151 pKa = 3.57RR152 pKa = 11.84AVTASDD158 pKa = 3.99LSASQGAQTKK168 pKa = 9.89KK169 pKa = 10.01FYY171 pKa = 8.59EE172 pKa = 4.21TAVVYY177 pKa = 8.45MPRR180 pKa = 11.84KK181 pKa = 8.11TDD183 pKa = 3.81LLYY186 pKa = 10.66TSAGEE191 pKa = 4.05DD192 pKa = 3.19PRR194 pKa = 11.84LFMPASFWIISEE206 pKa = 4.27GLPSSNLTMIVSVVWDD222 pKa = 3.72VTLSQPTLEE231 pKa = 4.24NSHH234 pKa = 6.41NNSFLLVGEE243 pKa = 4.7IVPNPANYY251 pKa = 9.85NLRR254 pKa = 11.84YY255 pKa = 9.52SPPGGDD261 pKa = 3.67PQDD264 pKa = 4.29DD265 pKa = 3.76ASSIIPAVLRR275 pKa = 11.84EE276 pKa = 4.23TPGYY280 pKa = 10.5HH281 pKa = 5.91YY282 pKa = 10.72FRR284 pKa = 11.84VPTFTIEE291 pKa = 4.02YY292 pKa = 10.33SEE294 pKa = 4.46GTGDD298 pKa = 3.17TGTIQAHH305 pKa = 4.63FVVYY309 pKa = 8.48HH310 pKa = 5.01TTDD313 pKa = 2.63KK314 pKa = 11.14KK315 pKa = 11.08LYY317 pKa = 8.26YY318 pKa = 10.02SSNGRR323 pKa = 11.84DD324 pKa = 3.2VEE326 pKa = 4.4TTMWQGNVDD335 pKa = 3.31AHH337 pKa = 5.12QTLVPCGTFMKK348 pKa = 10.81YY349 pKa = 9.92VGQEE353 pKa = 3.6NSCRR357 pKa = 11.84DD358 pKa = 3.8TKK360 pKa = 11.36LLTPKK365 pKa = 10.21LLSEE369 pKa = 4.55TSPGSTSSSTNLSAKK384 pKa = 6.77MQKK387 pKa = 10.52LEE389 pKa = 4.09TLFLEE394 pKa = 5.76LKK396 pKa = 10.53QNYY399 pKa = 9.19QKK401 pKa = 10.99DD402 pKa = 4.19SKK404 pKa = 11.0PLMEE408 pKa = 5.02EE409 pKa = 4.28SMILKK414 pKa = 10.01PNLVEE419 pKa = 4.87KK420 pKa = 11.06LEE422 pKa = 3.91QLEE425 pKa = 4.25LL426 pKa = 4.42

Molecular weight:
47.11 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1518

426

1092

759.0

85.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.007 ± 0.676

1.252 ± 0.04

5.929 ± 0.746

5.797 ± 0.321

3.36 ± 0.037

6.192 ± 0.074

1.515 ± 0.065

5.072 ± 0.311

7.773 ± 0.61

8.3 ± 0.162

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.096 ± 0.216

4.809 ± 0.177

5.863 ± 0.122

3.821 ± 0.152

5.007 ± 0.039

7.642 ± 1.126

6.653 ± 0.793

8.103 ± 0.419

1.647 ± 0.359

3.162 ± 0.301

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski