Capybara microvirus Cap1_SP_209

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W852|A0A4P8W852_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_209 OX=2585410 PE=4 SV=1
MM1 pKa = 6.78TAFRR5 pKa = 11.84SRR7 pKa = 11.84FDD9 pKa = 3.58YY10 pKa = 11.54GEE12 pKa = 3.88MPGTVNSEE20 pKa = 3.71PSMTIQSEE28 pKa = 4.07ADD30 pKa = 3.56STSVEE35 pKa = 3.93YY36 pKa = 10.75ALRR39 pKa = 11.84RR40 pKa = 11.84FNATGILGDD49 pKa = 3.88PDD51 pKa = 3.71RR52 pKa = 11.84LASAAYY58 pKa = 10.29LDD60 pKa = 4.04VSDD63 pKa = 4.39VQDD66 pKa = 4.63FEE68 pKa = 4.42QSCNVVARR76 pKa = 11.84ARR78 pKa = 11.84QVFEE82 pKa = 4.36ALPSEE87 pKa = 4.39EE88 pKa = 3.59RR89 pKa = 11.84RR90 pKa = 11.84KK91 pKa = 10.86YY92 pKa = 10.54GDD94 pKa = 3.3SLQVYY99 pKa = 8.28MEE101 pKa = 4.24SRR103 pKa = 11.84LEE105 pKa = 4.2EE106 pKa = 3.89IAQVSGAPSPVVEE119 pKa = 4.61EE120 pKa = 4.75TPSSAAPDD128 pKa = 3.33AAAKK132 pKa = 10.32VDD134 pKa = 3.48

Molecular weight: 14.61 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5N3|A0A4P8W5N3_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_209 OX=2585410 PE=4 SV=1
MM1 pKa = 7.61PCYY4 pKa = 10.32HH5 pKa = 7.36PVQAWRR11 pKa = 11.84VRR13 pKa = 11.84SGRR16 pKa = 11.84NEE18 pKa = 3.72NGKK21 pKa = 8.87WPITFQFKK29 pKa = 10.02QGYY32 pKa = 7.92ADD34 pKa = 3.46KK35 pKa = 10.24EE36 pKa = 3.96IRR38 pKa = 11.84VPCGQCIGCRR48 pKa = 11.84LEE50 pKa = 4.42KK51 pKa = 10.69SRR53 pKa = 11.84VWALRR58 pKa = 11.84CLHH61 pKa = 6.72EE62 pKa = 4.64SQLHH66 pKa = 4.66EE67 pKa = 4.14QCCFLTLTYY76 pKa = 10.18RR77 pKa = 11.84DD78 pKa = 3.74NPGTLVLRR86 pKa = 11.84DD87 pKa = 3.48LQNFFKK93 pKa = 10.73RR94 pKa = 11.84LRR96 pKa = 11.84KK97 pKa = 9.52AIYY100 pKa = 8.09PIKK103 pKa = 9.97VRR105 pKa = 11.84YY106 pKa = 7.28YY107 pKa = 9.44ACGEE111 pKa = 3.99YY112 pKa = 10.56GSNFGRR118 pKa = 11.84PHH120 pKa = 4.66YY121 pKa = 10.41HH122 pKa = 6.81CLLFGYY128 pKa = 9.97DD129 pKa = 3.72FSRR132 pKa = 11.84DD133 pKa = 2.96RR134 pKa = 11.84VLFKK138 pKa = 10.89RR139 pKa = 11.84SGTNALYY146 pKa = 10.41SSRR149 pKa = 11.84LLDD152 pKa = 3.7SLWTHH157 pKa = 6.86GYY159 pKa = 10.34CLIGDD164 pKa = 3.82VSFDD168 pKa = 3.02SCAYY172 pKa = 7.89VARR175 pKa = 11.84YY176 pKa = 8.43CVKK179 pKa = 10.42KK180 pKa = 9.35VTGEE184 pKa = 4.21GKK186 pKa = 9.7VEE188 pKa = 4.36HH189 pKa = 6.62YY190 pKa = 10.8VDD192 pKa = 4.84PDD194 pKa = 3.29TGEE197 pKa = 3.72LRR199 pKa = 11.84KK200 pKa = 10.0PEE202 pKa = 4.01FAVMSRR208 pKa = 11.84RR209 pKa = 11.84PGIGLDD215 pKa = 2.73WFLRR219 pKa = 11.84YY220 pKa = 9.12RR221 pKa = 11.84DD222 pKa = 3.22EE223 pKa = 4.48VMAHH227 pKa = 6.66EE228 pKa = 4.96GMCYY232 pKa = 9.92INGVFCKK239 pKa = 10.1IPRR242 pKa = 11.84YY243 pKa = 9.69YY244 pKa = 10.35EE245 pKa = 4.14EE246 pKa = 5.47KK247 pKa = 10.46DD248 pKa = 3.11ACAGNDD254 pKa = 3.65GLVKK258 pKa = 10.49LRR260 pKa = 11.84QARR263 pKa = 11.84AAAARR268 pKa = 11.84RR269 pKa = 11.84VQDD272 pKa = 3.59MGEE275 pKa = 3.89QSPDD279 pKa = 2.88RR280 pKa = 11.84LAVRR284 pKa = 11.84EE285 pKa = 4.19EE286 pKa = 4.03CAEE289 pKa = 4.09MNLARR294 pKa = 11.84LKK296 pKa = 10.63RR297 pKa = 11.84GYY299 pKa = 10.61EE300 pKa = 3.85EE301 pKa = 3.96TASFLQPFEE310 pKa = 4.09

Molecular weight: 36.04 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1341

85

578

268.2

29.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.799 ± 1.944

1.342 ± 1.041

6.115 ± 0.547

4.847 ± 1.026

4.773 ± 0.446

7.383 ± 0.758

1.79 ± 0.362

3.505 ± 0.845

3.579 ± 0.581

8.352 ± 0.528

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.237 ± 0.67

4.549 ± 0.751

4.847 ± 0.819

4.773 ± 0.476

7.084 ± 0.947

8.949 ± 1.317

5.444 ± 1.178

6.04 ± 0.847

1.566 ± 0.332

4.027 ± 0.601
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski