Lentimonas sp. CC11

Taxonomy: cellular organisms; Bacteria; PVC group; Verrucomicrobia; Verrucomicrobia incertae sedis; Lentimonas; unclassified Lentimonas

Average proteome isoelectric point is 6.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4076 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6N4WXT5|A0A6N4WXT5_9BACT Unannotated OS=Lentimonas sp. CC11 OX=2676096 GN=LCC11_48_8 PE=4 SV=1
MM1 pKa = 6.73VCLRR5 pKa = 11.84VADD8 pKa = 4.09SATLFHH14 pKa = 6.54QSPAHH19 pKa = 4.73SVCRR23 pKa = 11.84TFVFPIFFHH32 pKa = 5.78VLPLNRR38 pKa = 11.84HH39 pKa = 6.32FIFSITFLALLSVQASDD56 pKa = 3.73TISVNFHH63 pKa = 6.39VGDD66 pKa = 4.49DD67 pKa = 3.71SDD69 pKa = 4.09NQVDD73 pKa = 4.46HH74 pKa = 7.04ILTSGEE80 pKa = 4.05MAGLASYY87 pKa = 8.37ATDD90 pKa = 2.65QWNNIDD96 pKa = 3.91IGNGGSNDD104 pKa = 3.36SAQIFAATNLSDD116 pKa = 3.65ASGNLSVATLSTSADD131 pKa = 3.74STWFTGYY138 pKa = 10.74AAGPASSEE146 pKa = 4.29AEE148 pKa = 4.0LGLAGNDD155 pKa = 2.99DD156 pKa = 4.68DD157 pKa = 6.37LFNSYY162 pKa = 10.38LALNGPSGDD171 pKa = 3.77GTPADD176 pKa = 3.54AAILNVSGLGSDD188 pKa = 3.99YY189 pKa = 11.11TSGGYY194 pKa = 10.03AVIVYY199 pKa = 10.12SDD201 pKa = 3.63SDD203 pKa = 3.75KK204 pKa = 11.01TSSSSTRR211 pKa = 11.84TSTFTLTPLGEE222 pKa = 4.15SSIALSTEE230 pKa = 3.98DD231 pKa = 3.28NATFSEE237 pKa = 4.95SYY239 pKa = 10.71DD240 pKa = 3.54ADD242 pKa = 4.19GGDD245 pKa = 3.75GYY247 pKa = 11.59SNYY250 pKa = 9.89VVFEE254 pKa = 4.11NLSAASFSLEE264 pKa = 3.94LTSPGGGGRR273 pKa = 11.84AALSGFQIIPEE284 pKa = 4.18PTISTLDD291 pKa = 3.18IVSFTTDD298 pKa = 3.18DD299 pKa = 3.64DD300 pKa = 5.32SIVVGEE306 pKa = 4.36STTLSWQTVSATSLTLNPGSVDD328 pKa = 3.37VTGTTSRR335 pKa = 11.84VVSPLATTEE344 pKa = 3.97YY345 pKa = 10.77TLIASDD351 pKa = 3.66GAGIVDD357 pKa = 4.1ASIDD361 pKa = 3.54IAVGEE366 pKa = 4.37PVPEE370 pKa = 4.42VISFTADD377 pKa = 2.78APYY380 pKa = 10.66LVVGEE385 pKa = 4.4SVVLRR390 pKa = 11.84WEE392 pKa = 3.85TAYY395 pKa = 9.7ATTLTLDD402 pKa = 3.57PGGIDD407 pKa = 3.39VTGTTSLEE415 pKa = 3.9LTPTVEE421 pKa = 4.01TTYY424 pKa = 11.08TLTASDD430 pKa = 4.07GALNDD435 pKa = 4.52DD436 pKa = 4.13ASTTIKK442 pKa = 10.49FMPAVPNILIFLVDD456 pKa = 4.52DD457 pKa = 3.82MGITDD462 pKa = 3.74TSVPFVYY469 pKa = 10.47DD470 pKa = 3.26EE471 pKa = 5.55GVAQYY476 pKa = 11.82YY477 pKa = 9.49NFNYY481 pKa = 10.1YY482 pKa = 10.19NHH484 pKa = 6.67TPNMEE489 pKa = 4.22TLASQGMKK497 pKa = 9.22FTQAYY502 pKa = 6.05ATPVCSSTRR511 pKa = 11.84VSLMSGYY518 pKa = 8.24NTTRR522 pKa = 11.84HH523 pKa = 5.14GVISQVPPSGTEE535 pKa = 3.47PATISPVTSLLDD547 pKa = 3.81PPNNWKK553 pKa = 8.78RR554 pKa = 11.84TGLLEE559 pKa = 4.18SDD561 pKa = 4.82KK562 pKa = 10.91EE563 pKa = 5.11SMMPWILRR571 pKa = 11.84EE572 pKa = 3.66AGYY575 pKa = 8.23RR576 pKa = 11.84TIHH579 pKa = 6.43AGKK582 pKa = 10.01AHH584 pKa = 6.71FSSTNGFAKK593 pKa = 10.56YY594 pKa = 7.42PTAIGFDD601 pKa = 3.76VNLGGTQAGSSNYY614 pKa = 8.65TNYY617 pKa = 10.88GGLPNMSSYY626 pKa = 11.22AAADD630 pKa = 3.57VFLTDD635 pKa = 5.42ALTQAMNSEE644 pKa = 4.4IGNSLEE650 pKa = 4.01AGLPFFAYY658 pKa = 7.98MSHH661 pKa = 6.8YY662 pKa = 9.91GVHH665 pKa = 6.37SPFTNDD671 pKa = 2.81PNATADD677 pKa = 3.42YY678 pKa = 9.35TKK680 pKa = 10.38IVLPDD685 pKa = 3.43EE686 pKa = 4.97SEE688 pKa = 4.41VSVSNSNQRR697 pKa = 11.84IFGSMLEE704 pKa = 4.68GMDD707 pKa = 3.48QSLGSILEE715 pKa = 3.93QLDD718 pKa = 3.56ALGVAEE724 pKa = 4.22EE725 pKa = 4.25TLVIFMGDD733 pKa = 3.43NGSDD737 pKa = 3.56APQATYY743 pKa = 11.07NGFAGSPFSDD753 pKa = 3.94FPLRR757 pKa = 11.84GKK759 pKa = 10.28KK760 pKa = 9.95GSSWEE765 pKa = 3.88GGIRR769 pKa = 11.84VPMIVAWAKK778 pKa = 10.28VDD780 pKa = 3.42PTNPVQAAFPIPQGTVEE797 pKa = 4.74DD798 pKa = 4.44DD799 pKa = 4.57LVVVWDD805 pKa = 4.14ILPTVLNITEE815 pKa = 4.09VEE817 pKa = 4.17APHH820 pKa = 7.24VFDD823 pKa = 6.41GYY825 pKa = 11.5DD826 pKa = 3.34LTPYY830 pKa = 10.97LLGHH834 pKa = 7.29AGTHH838 pKa = 6.38RR839 pKa = 11.84PQEE842 pKa = 3.98MLMYY846 pKa = 10.65LPIDD850 pKa = 3.38HH851 pKa = 7.09RR852 pKa = 11.84NDD854 pKa = 3.03YY855 pKa = 10.73FSIYY859 pKa = 9.84RR860 pKa = 11.84DD861 pKa = 3.87EE862 pKa = 4.16EE863 pKa = 3.8WKK865 pKa = 10.76LIYY868 pKa = 10.46FFATDD873 pKa = 4.14SYY875 pKa = 11.46TLYY878 pKa = 11.29NLDD881 pKa = 3.65TDD883 pKa = 3.98PTEE886 pKa = 4.9SNDD889 pKa = 3.34VAGDD893 pKa = 3.34HH894 pKa = 6.84SDD896 pKa = 3.17RR897 pKa = 11.84VMAMARR903 pKa = 11.84SMAQEE908 pKa = 4.47FEE910 pKa = 4.53RR911 pKa = 11.84TWGDD915 pKa = 3.96QGQLWPTFDD924 pKa = 4.69SDD926 pKa = 4.7SSDD929 pKa = 4.88DD930 pKa = 4.0PFSMPNLPAVDD941 pKa = 4.94LDD943 pKa = 3.71MDD945 pKa = 4.25GLGDD949 pKa = 3.69NSEE952 pKa = 4.26DD953 pKa = 3.6ANLNGLIDD961 pKa = 4.56AGEE964 pKa = 4.27TDD966 pKa = 4.08PDD968 pKa = 3.71DD969 pKa = 3.59WDD971 pKa = 3.82TDD973 pKa = 3.49GDD975 pKa = 3.86RR976 pKa = 11.84TDD978 pKa = 5.35DD979 pKa = 3.57YY980 pKa = 11.46TEE982 pKa = 4.01RR983 pKa = 11.84RR984 pKa = 11.84LNLDD988 pKa = 3.67PLDD991 pKa = 4.3ANSFFAARR999 pKa = 11.84VVSTGTGNLDD1009 pKa = 3.9LAWPSAPGLSFDD1021 pKa = 4.82ILSSDD1026 pKa = 4.13DD1027 pKa = 3.78LSTPFEE1033 pKa = 4.32DD1034 pKa = 3.06WTRR1037 pKa = 11.84LISGVEE1043 pKa = 3.84ADD1045 pKa = 4.15DD1046 pKa = 4.02TLAEE1050 pKa = 4.68TIQSLTIDD1058 pKa = 3.8PEE1060 pKa = 3.99QDD1062 pKa = 2.87KK1063 pKa = 10.91EE1064 pKa = 4.48FYY1066 pKa = 10.61SVEE1069 pKa = 4.02LLPP1072 pKa = 5.54

Molecular weight: 114.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6N4WXM3|A0A6N4WXM3_9BACT Unannotated OS=Lentimonas sp. CC11 OX=2676096 GN=LCC11_26_3 PE=4 SV=1
MM1 pKa = 7.14QKK3 pKa = 8.56TRR5 pKa = 11.84KK6 pKa = 9.97SIAKK10 pKa = 9.38RR11 pKa = 11.84FKK13 pKa = 9.88KK14 pKa = 9.24TGTGKK19 pKa = 10.57LLRR22 pKa = 11.84RR23 pKa = 11.84TPGHH27 pKa = 5.98RR28 pKa = 11.84HH29 pKa = 5.44LLRR32 pKa = 11.84NKK34 pKa = 9.4SVKK37 pKa = 7.93QRR39 pKa = 11.84RR40 pKa = 11.84RR41 pKa = 11.84AGSSKK46 pKa = 10.36LVAPGQRR53 pKa = 11.84ANLIRR58 pKa = 11.84GLPFAA63 pKa = 5.56

Molecular weight: 7.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4076

0

4076

1428820

25

4680

350.5

38.74

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.328 ± 0.036

1.079 ± 0.014

5.984 ± 0.036

6.443 ± 0.036

4.137 ± 0.02

7.508 ± 0.04

2.188 ± 0.019

5.842 ± 0.027

4.667 ± 0.037

9.768 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.289 ± 0.019

3.766 ± 0.026

4.542 ± 0.024

3.688 ± 0.024

5.199 ± 0.039

6.591 ± 0.033

5.744 ± 0.041

6.671 ± 0.036

1.47 ± 0.016

3.091 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski