Amino acid dipepetide frequency for Phaseolus vulgaris alphaendornavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
1.732AlaAla: 1.732 ± 0.0
1.949AlaCys: 1.949 ± 0.0
2.599AlaAsp: 2.599 ± 0.0
2.165AlaGlu: 2.165 ± 0.0
1.299AlaPhe: 1.299 ± 0.0
1.516AlaGly: 1.516 ± 0.0
0.217AlaHis: 0.217 ± 0.0
4.331AlaIle: 4.331 ± 0.0
3.465AlaLys: 3.465 ± 0.0
4.547AlaLeu: 4.547 ± 0.0
1.299AlaMet: 1.299 ± 0.0
4.114AlaAsn: 4.114 ± 0.0
1.516AlaPro: 1.516 ± 0.0
0.866AlaGln: 0.866 ± 0.0
2.165AlaArg: 2.165 ± 0.0
3.248AlaSer: 3.248 ± 0.0
3.898AlaThr: 3.898 ± 0.0
3.032AlaVal: 3.032 ± 0.0
0.433AlaTrp: 0.433 ± 0.0
0.65AlaTyr: 0.65 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.866CysAla: 0.866 ± 0.0
1.732CysCys: 1.732 ± 0.0
1.083CysAsp: 1.083 ± 0.0
1.949CysGlu: 1.949 ± 0.0
0.65CysPhe: 0.65 ± 0.0
2.165CysGly: 2.165 ± 0.0
0.65CysHis: 0.65 ± 0.0
1.949CysIle: 1.949 ± 0.0
2.599CysLys: 2.599 ± 0.0
1.083CysLeu: 1.083 ± 0.0
1.299CysMet: 1.299 ± 0.0
1.516CysAsn: 1.516 ± 0.0
1.083CysPro: 1.083 ± 0.0
1.083CysGln: 1.083 ± 0.0
0.217CysArg: 0.217 ± 0.0
1.732CysSer: 1.732 ± 0.0
1.732CysThr: 1.732 ± 0.0
0.65CysVal: 0.65 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.866CysTyr: 0.866 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.465AspAla: 3.465 ± 0.0
0.217AspCys: 0.217 ± 0.0
3.248AspAsp: 3.248 ± 0.0
3.898AspGlu: 3.898 ± 0.0
1.732AspPhe: 1.732 ± 0.0
3.032AspGly: 3.032 ± 0.0
1.949AspHis: 1.949 ± 0.0
4.764AspIle: 4.764 ± 0.0
3.898AspLys: 3.898 ± 0.0
6.713AspLeu: 6.713 ± 0.0
1.949AspMet: 1.949 ± 0.0
3.248AspAsn: 3.248 ± 0.0
2.165AspPro: 2.165 ± 0.0
2.599AspGln: 2.599 ± 0.0
1.516AspArg: 1.516 ± 0.0
3.248AspSer: 3.248 ± 0.0
1.732AspThr: 1.732 ± 0.0
3.681AspVal: 3.681 ± 0.0
0.866AspTrp: 0.866 ± 0.0
3.032AspTyr: 3.032 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
2.599GluAla: 2.599 ± 0.0
1.299GluCys: 1.299 ± 0.0
4.114GluAsp: 4.114 ± 0.0
2.599GluGlu: 2.599 ± 0.0
2.815GluPhe: 2.815 ± 0.0
1.949GluGly: 1.949 ± 0.0
1.299GluHis: 1.299 ± 0.0
3.032GluIle: 3.032 ± 0.0
2.382GluLys: 2.382 ± 0.0
7.579GluLeu: 7.579 ± 0.0
2.382GluMet: 2.382 ± 0.0
3.465GluAsn: 3.465 ± 0.0
1.516GluPro: 1.516 ± 0.0
3.032GluGln: 3.032 ± 0.0
1.516GluArg: 1.516 ± 0.0
3.898GluSer: 3.898 ± 0.0
1.516GluThr: 1.516 ± 0.0
3.032GluVal: 3.032 ± 0.0
0.866GluTrp: 0.866 ± 0.0
2.165GluTyr: 2.165 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
0.866PheAla: 0.866 ± 0.0
0.65PheCys: 0.65 ± 0.0
1.083PheAsp: 1.083 ± 0.0
3.032PheGlu: 3.032 ± 0.0
0.433PhePhe: 0.433 ± 0.0
1.732PheGly: 1.732 ± 0.0
1.516PheHis: 1.516 ± 0.0
2.599PheIle: 2.599 ± 0.0
3.248PheLys: 3.248 ± 0.0
2.382PheLeu: 2.382 ± 0.0
1.516PheMet: 1.516 ± 0.0
1.516PheAsn: 1.516 ± 0.0
1.516PhePro: 1.516 ± 0.0
1.083PheGln: 1.083 ± 0.0
1.516PheArg: 1.516 ± 0.0
2.599PheSer: 2.599 ± 0.0
0.433PheThr: 0.433 ± 0.0
3.248PheVal: 3.248 ± 0.0
0.433PheTrp: 0.433 ± 0.0
0.433PheTyr: 0.433 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.165GlyAla: 2.165 ± 0.0
1.083GlyCys: 1.083 ± 0.0
3.248GlyAsp: 3.248 ± 0.0
1.949GlyGlu: 1.949 ± 0.0
1.083GlyPhe: 1.083 ± 0.0
2.382GlyGly: 2.382 ± 0.0
1.299GlyHis: 1.299 ± 0.0
2.382GlyIle: 2.382 ± 0.0
4.331GlyLys: 4.331 ± 0.0
4.764GlyLeu: 4.764 ± 0.0
1.299GlyMet: 1.299 ± 0.0
3.032GlyAsn: 3.032 ± 0.0
1.299GlyPro: 1.299 ± 0.0
1.732GlyGln: 1.732 ± 0.0
1.732GlyArg: 1.732 ± 0.0
3.032GlySer: 3.032 ± 0.0
4.114GlyThr: 4.114 ± 0.0
3.681GlyVal: 3.681 ± 0.0
0.866GlyTrp: 0.866 ± 0.0
2.382GlyTyr: 2.382 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
0.866HisAla: 0.866 ± 0.0
1.516HisCys: 1.516 ± 0.0
4.547HisAsp: 4.547 ± 0.0
1.516HisGlu: 1.516 ± 0.0
0.433HisPhe: 0.433 ± 0.0
1.083HisGly: 1.083 ± 0.0
1.299HisHis: 1.299 ± 0.0
1.732HisIle: 1.732 ± 0.0
4.114HisLys: 4.114 ± 0.0
2.382HisLeu: 2.382 ± 0.0
1.083HisMet: 1.083 ± 0.0
1.732HisAsn: 1.732 ± 0.0
0.866HisPro: 0.866 ± 0.0
1.516HisGln: 1.516 ± 0.0
0.866HisArg: 0.866 ± 0.0
2.165HisSer: 2.165 ± 0.0
0.866HisThr: 0.866 ± 0.0
1.083HisVal: 1.083 ± 0.0
0.217HisTrp: 0.217 ± 0.0
1.732HisTyr: 1.732 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.465IleAla: 3.465 ± 0.0
1.299IleCys: 1.299 ± 0.0
4.981IleAsp: 4.981 ± 0.0
3.248IleGlu: 3.248 ± 0.0
2.165IlePhe: 2.165 ± 0.0
3.465IleGly: 3.465 ± 0.0
2.382IleHis: 2.382 ± 0.0
5.847IleIle: 5.847 ± 0.0
8.229IleLys: 8.229 ± 0.0
5.414IleLeu: 5.414 ± 0.0
2.382IleMet: 2.382 ± 0.0
6.929IleAsn: 6.929 ± 0.0
3.681IlePro: 3.681 ± 0.0
1.083IleGln: 1.083 ± 0.0
3.898IleArg: 3.898 ± 0.0
5.414IleSer: 5.414 ± 0.0
6.929IleThr: 6.929 ± 0.0
4.981IleVal: 4.981 ± 0.0
0.65IleTrp: 0.65 ± 0.0
1.732IleTyr: 1.732 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
3.681LysAla: 3.681 ± 0.0
1.083LysCys: 1.083 ± 0.0
2.599LysAsp: 2.599 ± 0.0
3.681LysGlu: 3.681 ± 0.0
4.981LysPhe: 4.981 ± 0.0
3.032LysGly: 3.032 ± 0.0
3.032LysHis: 3.032 ± 0.0
3.898LysIle: 3.898 ± 0.0
1.732LysLys: 1.732 ± 0.0
8.662LysLeu: 8.662 ± 0.0
1.516LysMet: 1.516 ± 0.0
2.599LysAsn: 2.599 ± 0.0
3.248LysPro: 3.248 ± 0.0
3.248LysGln: 3.248 ± 0.0
2.599LysArg: 2.599 ± 0.0
5.414LysSer: 5.414 ± 0.0
5.414LysThr: 5.414 ± 0.0
6.28LysVal: 6.28 ± 0.0
1.732LysTrp: 1.732 ± 0.0
4.547LysTyr: 4.547 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
4.331LeuAla: 4.331 ± 0.0
2.599LeuCys: 2.599 ± 0.0
4.331LeuAsp: 4.331 ± 0.0
5.63LeuGlu: 5.63 ± 0.0
2.165LeuPhe: 2.165 ± 0.0
6.063LeuGly: 6.063 ± 0.0
3.032LeuHis: 3.032 ± 0.0
8.229LeuIle: 8.229 ± 0.0
8.445LeuLys: 8.445 ± 0.0
12.343LeuLeu: 12.343 ± 0.0
1.949LeuMet: 1.949 ± 0.0
7.146LeuAsn: 7.146 ± 0.0
4.981LeuPro: 4.981 ± 0.0
1.732LeuGln: 1.732 ± 0.0
4.547LeuArg: 4.547 ± 0.0
9.528LeuSer: 9.528 ± 0.0
7.579LeuThr: 7.579 ± 0.0
5.197LeuVal: 5.197 ± 0.0
1.083LeuTrp: 1.083 ± 0.0
3.465LeuTyr: 3.465 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.165MetAla: 2.165 ± 0.0
0.866MetCys: 0.866 ± 0.0
0.866MetAsp: 0.866 ± 0.0
0.866MetGlu: 0.866 ± 0.0
1.732MetPhe: 1.732 ± 0.0
1.516MetGly: 1.516 ± 0.0
1.516MetHis: 1.516 ± 0.0
2.382MetIle: 2.382 ± 0.0
1.299MetLys: 1.299 ± 0.0
3.032MetLeu: 3.032 ± 0.0
1.083MetMet: 1.083 ± 0.0
1.732MetAsn: 1.732 ± 0.0
0.65MetPro: 0.65 ± 0.0
1.516MetGln: 1.516 ± 0.0
1.949MetArg: 1.949 ± 0.0
2.599MetSer: 2.599 ± 0.0
0.866MetThr: 0.866 ± 0.0
1.083MetVal: 1.083 ± 0.0
0.217MetTrp: 0.217 ± 0.0
0.65MetTyr: 0.65 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.516AsnAla: 1.516 ± 0.0
1.949AsnCys: 1.949 ± 0.0
4.114AsnAsp: 4.114 ± 0.0
2.165AsnGlu: 2.165 ± 0.0
2.382AsnPhe: 2.382 ± 0.0
2.382AsnGly: 2.382 ± 0.0
1.299AsnHis: 1.299 ± 0.0
6.713AsnIle: 6.713 ± 0.0
5.63AsnLys: 5.63 ± 0.0
7.796AsnLeu: 7.796 ± 0.0
1.299AsnMet: 1.299 ± 0.0
4.547AsnAsn: 4.547 ± 0.0
3.898AsnPro: 3.898 ± 0.0
1.949AsnGln: 1.949 ± 0.0
3.032AsnArg: 3.032 ± 0.0
4.547AsnSer: 4.547 ± 0.0
3.248AsnThr: 3.248 ± 0.0
4.764AsnVal: 4.764 ± 0.0
0.433AsnTrp: 0.433 ± 0.0
4.547AsnTyr: 4.547 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.815ProAla: 2.815 ± 0.0
1.083ProCys: 1.083 ± 0.0
2.165ProAsp: 2.165 ± 0.0
2.815ProGlu: 2.815 ± 0.0
0.433ProPhe: 0.433 ± 0.0
1.732ProGly: 1.732 ± 0.0
1.083ProHis: 1.083 ± 0.0
3.681ProIle: 3.681 ± 0.0
3.248ProLys: 3.248 ± 0.0
3.898ProLeu: 3.898 ± 0.0
1.083ProMet: 1.083 ± 0.0
1.516ProAsn: 1.516 ± 0.0
1.299ProPro: 1.299 ± 0.0
0.866ProGln: 0.866 ± 0.0
0.65ProArg: 0.65 ± 0.0
2.815ProSer: 2.815 ± 0.0
2.165ProThr: 2.165 ± 0.0
2.165ProVal: 2.165 ± 0.0
0.866ProTrp: 0.866 ± 0.0
1.299ProTyr: 1.299 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.815GlnAla: 2.815 ± 0.0
1.299GlnCys: 1.299 ± 0.0
1.083GlnAsp: 1.083 ± 0.0
1.083GlnGlu: 1.083 ± 0.0
2.165GlnPhe: 2.165 ± 0.0
1.516GlnGly: 1.516 ± 0.0
1.516GlnHis: 1.516 ± 0.0
2.165GlnIle: 2.165 ± 0.0
0.65GlnLys: 0.65 ± 0.0
5.63GlnLeu: 5.63 ± 0.0
0.433GlnMet: 0.433 ± 0.0
0.433GlnAsn: 0.433 ± 0.0
2.165GlnPro: 2.165 ± 0.0
1.516GlnGln: 1.516 ± 0.0
1.083GlnArg: 1.083 ± 0.0
2.165GlnSer: 2.165 ± 0.0
2.165GlnThr: 2.165 ± 0.0
2.815GlnVal: 2.815 ± 0.0
0.65GlnTrp: 0.65 ± 0.0
1.516GlnTyr: 1.516 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.599ArgAla: 2.599 ± 0.0
0.65ArgCys: 0.65 ± 0.0
1.732ArgAsp: 1.732 ± 0.0
1.949ArgGlu: 1.949 ± 0.0
1.083ArgPhe: 1.083 ± 0.0
1.516ArgGly: 1.516 ± 0.0
0.433ArgHis: 0.433 ± 0.0
2.382ArgIle: 2.382 ± 0.0
3.465ArgLys: 3.465 ± 0.0
5.197ArgLeu: 5.197 ± 0.0
0.433ArgMet: 0.433 ± 0.0
1.949ArgAsn: 1.949 ± 0.0
0.866ArgPro: 0.866 ± 0.0
1.516ArgGln: 1.516 ± 0.0
1.949ArgArg: 1.949 ± 0.0
3.898ArgSer: 3.898 ± 0.0
2.382ArgThr: 2.382 ± 0.0
2.382ArgVal: 2.382 ± 0.0
0.0ArgTrp: 0.0 ± 0.0
0.866ArgTyr: 0.866 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.032SerAla: 3.032 ± 0.0
1.732SerCys: 1.732 ± 0.0
4.764SerAsp: 4.764 ± 0.0
3.898SerGlu: 3.898 ± 0.0
1.299SerPhe: 1.299 ± 0.0
2.815SerGly: 2.815 ± 0.0
3.681SerHis: 3.681 ± 0.0
6.063SerIle: 6.063 ± 0.0
4.981SerLys: 4.981 ± 0.0
6.28SerLeu: 6.28 ± 0.0
2.599SerMet: 2.599 ± 0.0
4.981SerAsn: 4.981 ± 0.0
1.732SerPro: 1.732 ± 0.0
2.599SerGln: 2.599 ± 0.0
2.599SerArg: 2.599 ± 0.0
3.248SerSer: 3.248 ± 0.0
5.847SerThr: 5.847 ± 0.0
4.547SerVal: 4.547 ± 0.0
1.299SerTrp: 1.299 ± 0.0
2.382SerTyr: 2.382 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
1.299ThrAla: 1.299 ± 0.0
0.866ThrCys: 0.866 ± 0.0
3.465ThrAsp: 3.465 ± 0.0
3.681ThrGlu: 3.681 ± 0.0
1.732ThrPhe: 1.732 ± 0.0
4.764ThrGly: 4.764 ± 0.0
1.083ThrHis: 1.083 ± 0.0
6.28ThrIle: 6.28 ± 0.0
3.898ThrLys: 3.898 ± 0.0
5.847ThrLeu: 5.847 ± 0.0
1.732ThrMet: 1.732 ± 0.0
4.547ThrAsn: 4.547 ± 0.0
1.949ThrPro: 1.949 ± 0.0
1.949ThrGln: 1.949 ± 0.0
1.299ThrArg: 1.299 ± 0.0
4.114ThrSer: 4.114 ± 0.0
3.681ThrThr: 3.681 ± 0.0
3.465ThrVal: 3.465 ± 0.0
0.866ThrTrp: 0.866 ± 0.0
3.248ThrTyr: 3.248 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
2.815ValAla: 2.815 ± 0.0
1.949ValCys: 1.949 ± 0.0
2.382ValAsp: 2.382 ± 0.0
4.331ValGlu: 4.331 ± 0.0
1.083ValPhe: 1.083 ± 0.0
3.032ValGly: 3.032 ± 0.0
1.732ValHis: 1.732 ± 0.0
5.63ValIle: 5.63 ± 0.0
4.547ValLys: 4.547 ± 0.0
5.414ValLeu: 5.414 ± 0.0
1.299ValMet: 1.299 ± 0.0
8.012ValAsn: 8.012 ± 0.0
1.949ValPro: 1.949 ± 0.0
2.599ValGln: 2.599 ± 0.0
1.949ValArg: 1.949 ± 0.0
3.032ValSer: 3.032 ± 0.0
3.465ValThr: 3.465 ± 0.0
3.681ValVal: 3.681 ± 0.0
0.866ValTrp: 0.866 ± 0.0
2.382ValTyr: 2.382 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.433TrpAla: 0.433 ± 0.0
0.217TrpCys: 0.217 ± 0.0
0.866TrpAsp: 0.866 ± 0.0
0.217TrpGlu: 0.217 ± 0.0
0.65TrpPhe: 0.65 ± 0.0
0.217TrpGly: 0.217 ± 0.0
0.433TrpHis: 0.433 ± 0.0
1.516TrpIle: 1.516 ± 0.0
0.0TrpLys: 0.0 ± 0.0
1.299TrpLeu: 1.299 ± 0.0
1.083TrpMet: 1.083 ± 0.0
1.299TrpAsn: 1.299 ± 0.0
0.217TrpPro: 0.217 ± 0.0
1.299TrpGln: 1.299 ± 0.0
0.866TrpArg: 0.866 ± 0.0
0.866TrpSer: 0.866 ± 0.0
0.0TrpThr: 0.0 ± 0.0
1.299TrpVal: 1.299 ± 0.0
0.217TrpTrp: 0.217 ± 0.0
1.083TrpTyr: 1.083 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
1.516TyrAla: 1.516 ± 0.0
0.866TyrCys: 0.866 ± 0.0
3.681TyrAsp: 3.681 ± 0.0
2.382TyrGlu: 2.382 ± 0.0
1.516TyrPhe: 1.516 ± 0.0
1.949TyrGly: 1.949 ± 0.0
2.382TyrHis: 2.382 ± 0.0
2.599TyrIle: 2.599 ± 0.0
2.815TyrLys: 2.815 ± 0.0
4.114TyrLeu: 4.114 ± 0.0
0.65TyrMet: 0.65 ± 0.0
3.898TyrAsn: 3.898 ± 0.0
1.083TyrPro: 1.083 ± 0.0
1.083TyrGln: 1.083 ± 0.0
1.299TyrArg: 1.299 ± 0.0
2.815TyrSer: 2.815 ± 0.0
1.732TyrThr: 1.732 ± 0.0
1.083TyrVal: 1.083 ± 0.0
1.516TyrTrp: 1.516 ± 0.0
1.299TyrTyr: 1.299 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (4619 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski