Capybara microvirus Cap3_SP_319

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVS0|A0A4V1FVS0_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_319 OX=2585427 PE=4 SV=1
MM1 pKa = 7.67KK2 pKa = 10.47NQGSPILVRR11 pKa = 11.84HH12 pKa = 5.76YY13 pKa = 11.63SDD15 pKa = 3.64FHH17 pKa = 7.56QNFISSPLSEE27 pKa = 4.43FQNSLGSVDD36 pKa = 4.89DD37 pKa = 4.36YY38 pKa = 11.92SFEE41 pKa = 4.29AQLSSGLPLGSVNPTAFLGSPLSEE65 pKa = 3.71EE66 pKa = 4.54DD67 pKa = 3.4ANKK70 pKa = 10.35QITDD74 pKa = 3.14IVEE77 pKa = 4.66SINSS81 pKa = 3.49

Molecular weight: 8.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8B3|A0A4P8W8B3_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_319 OX=2585427 PE=4 SV=1
MM1 pKa = 7.81PCFTHH6 pKa = 6.14KK7 pKa = 9.67TLFNRR12 pKa = 11.84VSRR15 pKa = 11.84HH16 pKa = 5.27LALTDD21 pKa = 3.62KK22 pKa = 10.63PFLEE26 pKa = 4.91AGCGVCHH33 pKa = 7.41DD34 pKa = 4.66CLSKK38 pKa = 10.85KK39 pKa = 10.29RR40 pKa = 11.84FSLYY44 pKa = 8.92IRR46 pKa = 11.84VWFEE50 pKa = 3.67VEE52 pKa = 5.12DD53 pKa = 3.46ILKK56 pKa = 10.66RR57 pKa = 11.84GGFVLFPTYY66 pKa = 10.25TYY68 pKa = 11.16DD69 pKa = 5.19DD70 pKa = 3.4SHH72 pKa = 8.47LPYY75 pKa = 10.03FDD77 pKa = 4.64SFSHH81 pKa = 5.0QLSYY85 pKa = 11.42GVVDD89 pKa = 3.75SRR91 pKa = 11.84DD92 pKa = 3.52YY93 pKa = 11.35KK94 pKa = 11.16LNEE97 pKa = 4.08VPCFDD102 pKa = 3.21MSVFKK107 pKa = 10.81GSKK110 pKa = 10.32GLVKK114 pKa = 10.56NLRR117 pKa = 11.84NYY119 pKa = 10.69AYY121 pKa = 10.28RR122 pKa = 11.84KK123 pKa = 8.62YY124 pKa = 10.22HH125 pKa = 5.99VDD127 pKa = 4.04GIKK130 pKa = 10.8YY131 pKa = 8.44LVCPEE136 pKa = 4.39YY137 pKa = 11.02GPSDD141 pKa = 3.68GSTHH145 pKa = 6.43RR146 pKa = 11.84PHH148 pKa = 6.12YY149 pKa = 10.3HH150 pKa = 6.81VMFFCPPCEE159 pKa = 4.02GGEE162 pKa = 4.54CVNSVYY168 pKa = 10.67RR169 pKa = 11.84QDD171 pKa = 3.66LTRR174 pKa = 11.84LALSLWQDD182 pKa = 2.84KK183 pKa = 10.71RR184 pKa = 11.84KK185 pKa = 10.41LGFADD190 pKa = 3.71YY191 pKa = 10.74SRR193 pKa = 11.84EE194 pKa = 3.65FGPYY198 pKa = 8.12VTSLQAAKK206 pKa = 10.37YY207 pKa = 8.61ISKK210 pKa = 10.52YY211 pKa = 6.51CTKK214 pKa = 10.53DD215 pKa = 2.79ISEE218 pKa = 4.43WLSVSPQLKK227 pKa = 9.5SYY229 pKa = 10.91LYY231 pKa = 8.62GTSSVIDD238 pKa = 3.83RR239 pKa = 11.84NNLFLIRR246 pKa = 11.84SYY248 pKa = 10.95LPKK251 pKa = 10.21PLWSDD256 pKa = 3.37GLGISMVDD264 pKa = 3.39YY265 pKa = 10.97LKK267 pKa = 11.2SLDD270 pKa = 3.52GDD272 pKa = 4.15SFVSAFTDD280 pKa = 4.62GVHH283 pKa = 5.71VPKK286 pKa = 10.65DD287 pKa = 3.81FKK289 pKa = 11.44EE290 pKa = 4.37DD291 pKa = 3.3GSKK294 pKa = 10.78NFYY297 pKa = 10.47SVPRR301 pKa = 11.84YY302 pKa = 9.56IYY304 pKa = 11.1NKK306 pKa = 9.67VLYY309 pKa = 10.06DD310 pKa = 3.76KK311 pKa = 11.43VGDD314 pKa = 3.77SYY316 pKa = 11.79LPNEE320 pKa = 4.45FNHH323 pKa = 6.83GYY325 pKa = 9.0IKK327 pKa = 10.6RR328 pKa = 11.84IISRR332 pKa = 11.84KK333 pKa = 9.33LDD335 pKa = 3.48LSFEE339 pKa = 4.33RR340 pKa = 11.84FNSDD344 pKa = 3.66LLNASIVSDD353 pKa = 3.21NGKK356 pKa = 10.19NYY358 pKa = 10.51NAFFNNLVSSYY369 pKa = 10.25GKK371 pKa = 10.09EE372 pKa = 3.55YY373 pKa = 11.02LFFSRR378 pKa = 11.84YY379 pKa = 9.36LYY381 pKa = 10.21NVPLSWFSSHH391 pKa = 7.67DD392 pKa = 3.08IDD394 pKa = 5.69VNVLDD399 pKa = 4.28SSSIRR404 pKa = 11.84DD405 pKa = 3.47VVVSYY410 pKa = 11.01LVDD413 pKa = 3.74CSLKK417 pKa = 10.4PRR419 pKa = 11.84FIYY422 pKa = 9.63PSKK425 pKa = 10.17PWYY428 pKa = 10.2KK429 pKa = 10.41SDD431 pKa = 4.18GFILGKK437 pKa = 10.15NIHH440 pKa = 6.14RR441 pKa = 11.84LGYY444 pKa = 9.45NVWVSDD450 pKa = 3.11GKK452 pKa = 10.88IFIRR456 pKa = 11.84SPRR459 pKa = 11.84NPQKK463 pKa = 11.01LIFNRR468 pKa = 11.84DD469 pKa = 3.18SFNSLDD475 pKa = 3.72YY476 pKa = 10.64FRR478 pKa = 11.84PPLIQHH484 pKa = 6.56FFFIWKK490 pKa = 8.83SYY492 pKa = 9.93KK493 pKa = 10.18VALQKK498 pKa = 11.17ASLLKK503 pKa = 10.88SKK505 pKa = 8.77TLQDD509 pKa = 3.22KK510 pKa = 10.75GKK512 pKa = 10.56AFYY515 pKa = 9.52THH517 pKa = 5.97VSTRR521 pKa = 11.84KK522 pKa = 9.29FRR524 pKa = 11.84PLKK527 pKa = 10.43FNSLTFTT534 pKa = 3.89

Molecular weight: 62.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1683

81

710

420.8

47.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.051 ± 2.056

1.307 ± 0.398

5.882 ± 0.63

4.04 ± 0.766

6.595 ± 1.259

6.298 ± 0.51

2.08 ± 0.556

5.169 ± 0.358

5.882 ± 0.941

9.269 ± 0.506

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.426 ± 0.59

7.605 ± 1.184

4.159 ± 0.651

3.09 ± 1.046

3.624 ± 0.77

11.23 ± 0.528

4.219 ± 1.02

6.358 ± 0.353

1.01 ± 0.214

5.704 ± 1.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski