Sulfurimonas sp. UBA12504

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Thiovulaceae; Sulfurimonas; unclassified Sulfurimonas

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2274 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D3VWR2|A0A2D3VWR2_9PROT Flagellin_D0/D1 domain-containing protein OS=Sulfurimonas sp. UBA12504 OX=2015903 GN=CFH84_01480 PE=4 SV=1
MM1 pKa = 7.61KK2 pKa = 10.4LLKK5 pKa = 10.43LSLAAAVLATGILAAEE21 pKa = 4.28EE22 pKa = 4.37SEE24 pKa = 4.13IGISANVAATSNYY37 pKa = 6.57VWRR40 pKa = 11.84GMTQSADD47 pKa = 3.16KK48 pKa = 10.22PAIQGGFDD56 pKa = 3.73LEE58 pKa = 4.46YY59 pKa = 10.65KK60 pKa = 10.34GAYY63 pKa = 9.34LGTWGSNVDD72 pKa = 3.48WGNDD76 pKa = 2.95ASMEE80 pKa = 4.12ADD82 pKa = 4.96FYY84 pKa = 11.68AGYY87 pKa = 10.56SNSLYY92 pKa = 10.7GVTYY96 pKa = 10.32DD97 pKa = 3.41IGAIKK102 pKa = 9.87IVYY105 pKa = 8.23PGEE108 pKa = 4.1MTSSNFAEE116 pKa = 4.83VYY118 pKa = 10.53LGLGYY123 pKa = 10.63DD124 pKa = 3.93FEE126 pKa = 4.92IFSIGAKK133 pKa = 9.13YY134 pKa = 10.91SNGIKK139 pKa = 9.63TDD141 pKa = 4.08DD142 pKa = 3.98FDD144 pKa = 6.68APDD147 pKa = 3.64NMEE150 pKa = 4.01GTISVPLPVEE160 pKa = 3.94ISLDD164 pKa = 3.36AAYY167 pKa = 9.91GVYY170 pKa = 10.61GKK172 pKa = 10.31DD173 pKa = 3.35GDD175 pKa = 4.25DD176 pKa = 3.63NGVGKK181 pKa = 10.5YY182 pKa = 9.74YY183 pKa = 10.87SVGLSKK189 pKa = 11.05SFGKK193 pKa = 10.42FDD195 pKa = 3.22FTLAYY200 pKa = 9.31TAMDD204 pKa = 4.49YY205 pKa = 8.75FTDD208 pKa = 4.59GADD211 pKa = 3.67SEE213 pKa = 5.21DD214 pKa = 4.39NIIGTIGTSFF224 pKa = 3.21

Molecular weight: 23.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D3VI56|A0A2D3VI56_9PROT RNA-binding protein OS=Sulfurimonas sp. UBA12504 OX=2015903 GN=CFH84_07940 PE=4 SV=1
MM1 pKa = 7.28KK2 pKa = 9.44RR3 pKa = 11.84TYY5 pKa = 10.04QPHH8 pKa = 4.86NTPRR12 pKa = 11.84KK13 pKa = 7.31RR14 pKa = 11.84THH16 pKa = 6.05GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.26NGRR28 pKa = 11.84RR29 pKa = 11.84VLNRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.64GRR39 pKa = 11.84KK40 pKa = 8.66RR41 pKa = 11.84LAVV44 pKa = 3.41

Molecular weight: 5.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2274

0

2274

638461

26

1451

280.8

31.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.31 ± 0.059

0.898 ± 0.022

5.445 ± 0.038

7.195 ± 0.056

5.061 ± 0.048

5.713 ± 0.056

2.095 ± 0.029

8.19 ± 0.048

7.941 ± 0.057

10.017 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.719 ± 0.025

5.108 ± 0.04

2.859 ± 0.031

3.3 ± 0.029

3.418 ± 0.031

6.698 ± 0.041

5.139 ± 0.046

6.146 ± 0.043

0.751 ± 0.018

3.964 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski