Flavobacterium haoranii

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium

Average proteome isoelectric point is 6.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2604 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M6IW77|A0A1M6IW77_9FLAO L-threonine dehydratase OS=Flavobacterium haoranii OX=683124 GN=ilvA PE=3 SV=1
MM1 pKa = 7.96RR2 pKa = 11.84KK3 pKa = 10.09NNMNKK8 pKa = 9.44ILMSSLLALALGFVSCDD25 pKa = 3.54NQDD28 pKa = 3.58DD29 pKa = 4.04ATGDD33 pKa = 3.67SVFEE37 pKa = 4.06VTEE40 pKa = 4.23GVVASVTTDD49 pKa = 3.78FDD51 pKa = 3.67NSATITLNEE60 pKa = 3.91YY61 pKa = 10.75DD62 pKa = 3.88EE63 pKa = 5.27EE64 pKa = 4.29EE65 pKa = 4.45FPFTITLNKK74 pKa = 8.92PSSIATRR81 pKa = 11.84FRR83 pKa = 11.84IVQIGGDD90 pKa = 3.51AVLGEE95 pKa = 4.9DD96 pKa = 4.43YY97 pKa = 10.9EE98 pKa = 4.31ILNLSDD104 pKa = 3.64EE105 pKa = 4.84SIEE108 pKa = 4.14FLDD111 pKa = 3.64IPARR115 pKa = 11.84EE116 pKa = 4.15TTVSGKK122 pKa = 10.08IKK124 pKa = 10.16ILSDD128 pKa = 3.34IYY130 pKa = 11.63VEE132 pKa = 4.17DD133 pKa = 4.03TKK135 pKa = 11.01TLSIQIGNQSLANATMQYY153 pKa = 10.34EE154 pKa = 4.59VVNFAIEE161 pKa = 5.01DD162 pKa = 3.77YY163 pKa = 10.6DD164 pKa = 4.11SSEE167 pKa = 4.53MIFEE171 pKa = 4.65LNYY174 pKa = 10.77GKK176 pKa = 10.28EE177 pKa = 4.11FYY179 pKa = 10.49YY180 pKa = 10.21QGEE183 pKa = 4.38MTTTCDD189 pKa = 3.29FEE191 pKa = 6.11YY192 pKa = 11.32DD193 pKa = 2.9MDD195 pKa = 4.32YY196 pKa = 11.48LVFDD200 pKa = 4.88SNFDD204 pKa = 3.35DD205 pKa = 3.48TGIYY209 pKa = 10.54DD210 pKa = 4.45GATGACPTEE219 pKa = 4.21SLSVSVDD226 pKa = 3.37PSHH229 pKa = 7.6PNYY232 pKa = 10.74LPDD235 pKa = 3.07GTYY238 pKa = 10.74YY239 pKa = 10.28IFYY242 pKa = 10.5SVWDD246 pKa = 4.27DD247 pKa = 3.66GGLSGLYY254 pKa = 9.6HH255 pKa = 7.51DD256 pKa = 5.34VFTIPTSVEE265 pKa = 4.36FYY267 pKa = 10.86RR268 pKa = 11.84PGLLNPLNFDD278 pKa = 3.4QEE280 pKa = 4.26SAYY283 pKa = 9.99IPDD286 pKa = 3.53STYY289 pKa = 10.95GSGAEE294 pKa = 4.49DD295 pKa = 3.64YY296 pKa = 11.41VLTIEE301 pKa = 4.57INSGVISVLDD311 pKa = 3.8SNNSVLGSARR321 pKa = 11.84FAVNHH326 pKa = 6.51DD327 pKa = 3.94KK328 pKa = 10.98IKK330 pKa = 10.89AAFANARR337 pKa = 11.84AKK339 pKa = 10.37SLKK342 pKa = 10.14KK343 pKa = 10.57

Molecular weight: 37.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M6IW98|A0A1M6IW98_9FLAO Ketol-acid reductoisomerase OS=Flavobacterium haoranii OX=683124 GN=SAMN05444337_1891 PE=3 SV=1
MM1 pKa = 6.53VTNLLHH7 pKa = 6.76FFEE10 pKa = 4.38KK11 pKa = 10.48HH12 pKa = 5.13GFFVAQRR19 pKa = 11.84LAEE22 pKa = 4.05RR23 pKa = 11.84LGIRR27 pKa = 11.84ATNVRR32 pKa = 11.84LFFIYY37 pKa = 10.25ISFITIGLGFGFYY50 pKa = 9.4LTLAFLLRR58 pKa = 11.84LKK60 pKa = 11.2DD61 pKa = 3.61MIHH64 pKa = 6.41TKK66 pKa = 10.26RR67 pKa = 11.84SSVFDD72 pKa = 3.68LL73 pKa = 4.35

Molecular weight: 8.57 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2604

0

2604

857636

31

2560

329.4

37.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.045 ± 0.049

0.771 ± 0.018

5.25 ± 0.039

6.901 ± 0.049

5.562 ± 0.046

6.125 ± 0.045

1.675 ± 0.021

8.135 ± 0.053

8.163 ± 0.066

9.12 ± 0.051

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.143 ± 0.028

6.719 ± 0.061

3.212 ± 0.028

3.476 ± 0.025

3.04 ± 0.026

6.386 ± 0.041

5.776 ± 0.06

6.371 ± 0.041

0.97 ± 0.017

4.159 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski