Amino acid dipepetide frequency for Hubei coleoptera virus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.369AlaAla: 3.369 ± 0.0
1.011AlaCys: 1.011 ± 0.0
2.695AlaAsp: 2.695 ± 0.0
2.358AlaGlu: 2.358 ± 0.0
3.369AlaPhe: 3.369 ± 0.0
4.043AlaGly: 4.043 ± 0.0
0.337AlaHis: 0.337 ± 0.0
4.043AlaIle: 4.043 ± 0.0
2.358AlaLys: 2.358 ± 0.0
3.706AlaLeu: 3.706 ± 0.0
2.695AlaMet: 2.695 ± 0.0
4.717AlaAsn: 4.717 ± 0.0
2.022AlaPro: 2.022 ± 0.0
1.685AlaGln: 1.685 ± 0.0
3.032AlaArg: 3.032 ± 0.0
4.717AlaSer: 4.717 ± 0.0
2.358AlaThr: 2.358 ± 0.0
4.043AlaVal: 4.043 ± 0.0
0.674AlaTrp: 0.674 ± 0.0
4.38AlaTyr: 4.38 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.337CysAla: 0.337 ± 0.0
0.0CysCys: 0.0 ± 0.0
1.011CysAsp: 1.011 ± 0.0
0.674CysGlu: 0.674 ± 0.0
0.337CysPhe: 0.337 ± 0.0
0.674CysGly: 0.674 ± 0.0
0.337CysHis: 0.337 ± 0.0
1.348CysIle: 1.348 ± 0.0
1.348CysLys: 1.348 ± 0.0
2.695CysLeu: 2.695 ± 0.0
0.337CysMet: 0.337 ± 0.0
0.0CysAsn: 0.0 ± 0.0
1.011CysPro: 1.011 ± 0.0
0.0CysGln: 0.0 ± 0.0
1.348CysArg: 1.348 ± 0.0
1.685CysSer: 1.685 ± 0.0
0.337CysThr: 0.337 ± 0.0
1.348CysVal: 1.348 ± 0.0
0.674CysTrp: 0.674 ± 0.0
0.337CysTyr: 0.337 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.043AspAla: 4.043 ± 0.0
1.011AspCys: 1.011 ± 0.0
3.032AspAsp: 3.032 ± 0.0
2.695AspGlu: 2.695 ± 0.0
2.022AspPhe: 2.022 ± 0.0
2.695AspGly: 2.695 ± 0.0
1.685AspHis: 1.685 ± 0.0
3.706AspIle: 3.706 ± 0.0
3.369AspLys: 3.369 ± 0.0
4.043AspLeu: 4.043 ± 0.0
2.695AspMet: 2.695 ± 0.0
3.369AspAsn: 3.369 ± 0.0
1.685AspPro: 1.685 ± 0.0
1.685AspGln: 1.685 ± 0.0
2.022AspArg: 2.022 ± 0.0
3.706AspSer: 3.706 ± 0.0
3.032AspThr: 3.032 ± 0.0
3.369AspVal: 3.369 ± 0.0
1.685AspTrp: 1.685 ± 0.0
1.685AspTyr: 1.685 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
2.022GluAla: 2.022 ± 0.0
0.674GluCys: 0.674 ± 0.0
3.369GluAsp: 3.369 ± 0.0
4.38GluGlu: 4.38 ± 0.0
2.695GluPhe: 2.695 ± 0.0
2.022GluGly: 2.022 ± 0.0
1.685GluHis: 1.685 ± 0.0
5.054GluIle: 5.054 ± 0.0
2.022GluLys: 2.022 ± 0.0
3.706GluLeu: 3.706 ± 0.0
4.38GluMet: 4.38 ± 0.0
2.358GluAsn: 2.358 ± 0.0
3.369GluPro: 3.369 ± 0.0
1.011GluGln: 1.011 ± 0.0
2.022GluArg: 2.022 ± 0.0
3.706GluSer: 3.706 ± 0.0
2.358GluThr: 2.358 ± 0.0
4.717GluVal: 4.717 ± 0.0
1.011GluTrp: 1.011 ± 0.0
3.369GluTyr: 3.369 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
2.695PheAla: 2.695 ± 0.0
0.674PheCys: 0.674 ± 0.0
3.369PheAsp: 3.369 ± 0.0
3.706PheGlu: 3.706 ± 0.0
1.011PhePhe: 1.011 ± 0.0
2.695PheGly: 2.695 ± 0.0
1.685PheHis: 1.685 ± 0.0
2.695PheIle: 2.695 ± 0.0
3.706PheLys: 3.706 ± 0.0
3.706PheLeu: 3.706 ± 0.0
0.337PheMet: 0.337 ± 0.0
4.043PheAsn: 4.043 ± 0.0
0.674PhePro: 0.674 ± 0.0
1.011PheGln: 1.011 ± 0.0
1.685PheArg: 1.685 ± 0.0
4.38PheSer: 4.38 ± 0.0
4.043PheThr: 4.043 ± 0.0
3.369PheVal: 3.369 ± 0.0
0.0PheTrp: 0.0 ± 0.0
3.032PheTyr: 3.032 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.695GlyAla: 2.695 ± 0.0
0.674GlyCys: 0.674 ± 0.0
5.054GlyAsp: 5.054 ± 0.0
3.032GlyGlu: 3.032 ± 0.0
2.695GlyPhe: 2.695 ± 0.0
1.011GlyGly: 1.011 ± 0.0
0.674GlyHis: 0.674 ± 0.0
5.054GlyIle: 5.054 ± 0.0
3.706GlyLys: 3.706 ± 0.0
3.706GlyLeu: 3.706 ± 0.0
1.685GlyMet: 1.685 ± 0.0
1.348GlyAsn: 1.348 ± 0.0
2.022GlyPro: 2.022 ± 0.0
0.674GlyGln: 0.674 ± 0.0
1.685GlyArg: 1.685 ± 0.0
3.369GlySer: 3.369 ± 0.0
2.695GlyThr: 2.695 ± 0.0
5.054GlyVal: 5.054 ± 0.0
0.674GlyTrp: 0.674 ± 0.0
3.369GlyTyr: 3.369 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.685HisAla: 1.685 ± 0.0
0.0HisCys: 0.0 ± 0.0
0.674HisAsp: 0.674 ± 0.0
0.337HisGlu: 0.337 ± 0.0
0.674HisPhe: 0.674 ± 0.0
1.685HisGly: 1.685 ± 0.0
0.337HisHis: 0.337 ± 0.0
3.032HisIle: 3.032 ± 0.0
0.337HisLys: 0.337 ± 0.0
3.032HisLeu: 3.032 ± 0.0
0.337HisMet: 0.337 ± 0.0
0.337HisAsn: 0.337 ± 0.0
2.695HisPro: 2.695 ± 0.0
0.337HisGln: 0.337 ± 0.0
3.032HisArg: 3.032 ± 0.0
2.358HisSer: 2.358 ± 0.0
1.348HisThr: 1.348 ± 0.0
0.674HisVal: 0.674 ± 0.0
0.0HisTrp: 0.0 ± 0.0
1.011HisTyr: 1.011 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.043IleAla: 4.043 ± 0.0
0.337IleCys: 0.337 ± 0.0
2.358IleAsp: 2.358 ± 0.0
4.717IleGlu: 4.717 ± 0.0
5.728IlePhe: 5.728 ± 0.0
4.043IleGly: 4.043 ± 0.0
2.022IleHis: 2.022 ± 0.0
5.054IleIle: 5.054 ± 0.0
7.412IleLys: 7.412 ± 0.0
3.706IleLeu: 3.706 ± 0.0
2.022IleMet: 2.022 ± 0.0
4.717IleAsn: 4.717 ± 0.0
4.38IlePro: 4.38 ± 0.0
2.022IleGln: 2.022 ± 0.0
2.022IleArg: 2.022 ± 0.0
4.043IleSer: 4.043 ± 0.0
6.402IleThr: 6.402 ± 0.0
6.065IleVal: 6.065 ± 0.0
0.674IleTrp: 0.674 ± 0.0
2.695IleTyr: 2.695 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.695LysAla: 2.695 ± 0.0
0.674LysCys: 0.674 ± 0.0
3.032LysAsp: 3.032 ± 0.0
2.022LysGlu: 2.022 ± 0.0
2.022LysPhe: 2.022 ± 0.0
2.022LysGly: 2.022 ± 0.0
3.369LysHis: 3.369 ± 0.0
7.075LysIle: 7.075 ± 0.0
5.054LysLys: 5.054 ± 0.0
5.054LysLeu: 5.054 ± 0.0
0.337LysMet: 0.337 ± 0.0
2.695LysAsn: 2.695 ± 0.0
2.358LysPro: 2.358 ± 0.0
3.369LysGln: 3.369 ± 0.0
2.022LysArg: 2.022 ± 0.0
3.369LysSer: 3.369 ± 0.0
3.032LysThr: 3.032 ± 0.0
5.054LysVal: 5.054 ± 0.0
1.011LysTrp: 1.011 ± 0.0
4.38LysTyr: 4.38 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.402LeuAla: 6.402 ± 0.0
2.022LeuCys: 2.022 ± 0.0
5.391LeuAsp: 5.391 ± 0.0
4.043LeuGlu: 4.043 ± 0.0
2.695LeuPhe: 2.695 ± 0.0
3.032LeuGly: 3.032 ± 0.0
2.358LeuHis: 2.358 ± 0.0
4.717LeuIle: 4.717 ± 0.0
5.391LeuLys: 5.391 ± 0.0
4.717LeuLeu: 4.717 ± 0.0
2.022LeuMet: 2.022 ± 0.0
5.054LeuAsn: 5.054 ± 0.0
4.717LeuPro: 4.717 ± 0.0
3.369LeuGln: 3.369 ± 0.0
6.065LeuArg: 6.065 ± 0.0
4.043LeuSer: 4.043 ± 0.0
6.402LeuThr: 6.402 ± 0.0
3.032LeuVal: 3.032 ± 0.0
1.348LeuTrp: 1.348 ± 0.0
4.717LeuTyr: 4.717 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.022MetAla: 2.022 ± 0.0
1.011MetCys: 1.011 ± 0.0
0.674MetAsp: 0.674 ± 0.0
1.685MetGlu: 1.685 ± 0.0
1.348MetPhe: 1.348 ± 0.0
2.022MetGly: 2.022 ± 0.0
1.348MetHis: 1.348 ± 0.0
2.358MetIle: 2.358 ± 0.0
1.685MetLys: 1.685 ± 0.0
4.043MetLeu: 4.043 ± 0.0
0.674MetMet: 0.674 ± 0.0
0.337MetAsn: 0.337 ± 0.0
2.695MetPro: 2.695 ± 0.0
2.022MetGln: 2.022 ± 0.0
1.348MetArg: 1.348 ± 0.0
1.685MetSer: 1.685 ± 0.0
1.348MetThr: 1.348 ± 0.0
1.348MetVal: 1.348 ± 0.0
1.011MetTrp: 1.011 ± 0.0
1.011MetTyr: 1.011 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.032AsnAla: 3.032 ± 0.0
1.011AsnCys: 1.011 ± 0.0
2.358AsnAsp: 2.358 ± 0.0
3.032AsnGlu: 3.032 ± 0.0
3.032AsnPhe: 3.032 ± 0.0
1.348AsnGly: 1.348 ± 0.0
0.337AsnHis: 0.337 ± 0.0
6.402AsnIle: 6.402 ± 0.0
3.369AsnLys: 3.369 ± 0.0
4.717AsnLeu: 4.717 ± 0.0
2.022AsnMet: 2.022 ± 0.0
5.054AsnAsn: 5.054 ± 0.0
4.043AsnPro: 4.043 ± 0.0
0.674AsnGln: 0.674 ± 0.0
2.022AsnArg: 2.022 ± 0.0
3.032AsnSer: 3.032 ± 0.0
4.38AsnThr: 4.38 ± 0.0
6.739AsnVal: 6.739 ± 0.0
0.674AsnTrp: 0.674 ± 0.0
1.685AsnTyr: 1.685 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
1.011ProAla: 1.011 ± 0.0
0.337ProCys: 0.337 ± 0.0
2.022ProAsp: 2.022 ± 0.0
4.043ProGlu: 4.043 ± 0.0
1.685ProPhe: 1.685 ± 0.0
3.706ProGly: 3.706 ± 0.0
2.358ProHis: 2.358 ± 0.0
3.369ProIle: 3.369 ± 0.0
1.011ProLys: 1.011 ± 0.0
7.075ProLeu: 7.075 ± 0.0
1.685ProMet: 1.685 ± 0.0
1.685ProAsn: 1.685 ± 0.0
3.369ProPro: 3.369 ± 0.0
1.685ProGln: 1.685 ± 0.0
0.674ProArg: 0.674 ± 0.0
2.358ProSer: 2.358 ± 0.0
2.358ProThr: 2.358 ± 0.0
5.054ProVal: 5.054 ± 0.0
0.0ProTrp: 0.0 ± 0.0
3.369ProTyr: 3.369 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.358GlnAla: 2.358 ± 0.0
0.337GlnCys: 0.337 ± 0.0
1.011GlnAsp: 1.011 ± 0.0
3.032GlnGlu: 3.032 ± 0.0
3.032GlnPhe: 3.032 ± 0.0
2.022GlnGly: 2.022 ± 0.0
0.337GlnHis: 0.337 ± 0.0
2.022GlnIle: 2.022 ± 0.0
1.685GlnLys: 1.685 ± 0.0
3.369GlnLeu: 3.369 ± 0.0
0.337GlnMet: 0.337 ± 0.0
2.358GlnAsn: 2.358 ± 0.0
1.348GlnPro: 1.348 ± 0.0
1.685GlnGln: 1.685 ± 0.0
1.685GlnArg: 1.685 ± 0.0
1.685GlnSer: 1.685 ± 0.0
1.011GlnThr: 1.011 ± 0.0
0.674GlnVal: 0.674 ± 0.0
0.337GlnTrp: 0.337 ± 0.0
0.674GlnTyr: 0.674 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.358ArgAla: 2.358 ± 0.0
0.674ArgCys: 0.674 ± 0.0
1.685ArgAsp: 1.685 ± 0.0
3.369ArgGlu: 3.369 ± 0.0
3.369ArgPhe: 3.369 ± 0.0
2.695ArgGly: 2.695 ± 0.0
0.0ArgHis: 0.0 ± 0.0
2.358ArgIle: 2.358 ± 0.0
3.706ArgLys: 3.706 ± 0.0
3.706ArgLeu: 3.706 ± 0.0
1.685ArgMet: 1.685 ± 0.0
2.022ArgAsn: 2.022 ± 0.0
1.348ArgPro: 1.348 ± 0.0
2.358ArgGln: 2.358 ± 0.0
2.695ArgArg: 2.695 ± 0.0
2.695ArgSer: 2.695 ± 0.0
1.685ArgThr: 1.685 ± 0.0
1.348ArgVal: 1.348 ± 0.0
1.348ArgTrp: 1.348 ± 0.0
3.369ArgTyr: 3.369 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.032SerAla: 3.032 ± 0.0
0.674SerCys: 0.674 ± 0.0
5.054SerAsp: 5.054 ± 0.0
4.043SerGlu: 4.043 ± 0.0
3.369SerPhe: 3.369 ± 0.0
1.348SerGly: 1.348 ± 0.0
2.695SerHis: 2.695 ± 0.0
4.717SerIle: 4.717 ± 0.0
2.358SerLys: 2.358 ± 0.0
6.065SerLeu: 6.065 ± 0.0
4.043SerMet: 4.043 ± 0.0
6.739SerAsn: 6.739 ± 0.0
2.358SerPro: 2.358 ± 0.0
1.685SerGln: 1.685 ± 0.0
2.695SerArg: 2.695 ± 0.0
3.369SerSer: 3.369 ± 0.0
5.054SerThr: 5.054 ± 0.0
3.706SerVal: 3.706 ± 0.0
2.695SerTrp: 2.695 ± 0.0
2.358SerTyr: 2.358 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
5.728ThrAla: 5.728 ± 0.0
0.674ThrCys: 0.674 ± 0.0
2.022ThrAsp: 2.022 ± 0.0
4.043ThrGlu: 4.043 ± 0.0
4.38ThrPhe: 4.38 ± 0.0
4.717ThrGly: 4.717 ± 0.0
0.337ThrHis: 0.337 ± 0.0
2.695ThrIle: 2.695 ± 0.0
2.695ThrLys: 2.695 ± 0.0
5.054ThrLeu: 5.054 ± 0.0
1.348ThrMet: 1.348 ± 0.0
2.695ThrAsn: 2.695 ± 0.0
3.032ThrPro: 3.032 ± 0.0
1.685ThrGln: 1.685 ± 0.0
1.685ThrArg: 1.685 ± 0.0
5.054ThrSer: 5.054 ± 0.0
3.369ThrThr: 3.369 ± 0.0
3.706ThrVal: 3.706 ± 0.0
1.348ThrTrp: 1.348 ± 0.0
2.358ThrTyr: 2.358 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
4.043ValAla: 4.043 ± 0.0
0.337ValCys: 0.337 ± 0.0
4.043ValAsp: 4.043 ± 0.0
2.358ValGlu: 2.358 ± 0.0
2.022ValPhe: 2.022 ± 0.0
4.043ValGly: 4.043 ± 0.0
1.011ValHis: 1.011 ± 0.0
3.032ValIle: 3.032 ± 0.0
7.075ValLys: 7.075 ± 0.0
5.391ValLeu: 5.391 ± 0.0
1.011ValMet: 1.011 ± 0.0
4.043ValAsn: 4.043 ± 0.0
4.043ValPro: 4.043 ± 0.0
2.022ValGln: 2.022 ± 0.0
4.043ValArg: 4.043 ± 0.0
6.739ValSer: 6.739 ± 0.0
3.706ValThr: 3.706 ± 0.0
5.054ValVal: 5.054 ± 0.0
1.011ValTrp: 1.011 ± 0.0
2.695ValTyr: 2.695 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.337TrpAla: 0.337 ± 0.0
0.674TrpCys: 0.674 ± 0.0
0.674TrpAsp: 0.674 ± 0.0
0.0TrpGlu: 0.0 ± 0.0
1.011TrpPhe: 1.011 ± 0.0
0.674TrpGly: 0.674 ± 0.0
0.337TrpHis: 0.337 ± 0.0
1.685TrpIle: 1.685 ± 0.0
0.337TrpLys: 0.337 ± 0.0
1.685TrpLeu: 1.685 ± 0.0
0.0TrpMet: 0.0 ± 0.0
2.358TrpAsn: 2.358 ± 0.0
0.337TrpPro: 0.337 ± 0.0
0.0TrpGln: 0.0 ± 0.0
1.011TrpArg: 1.011 ± 0.0
3.032TrpSer: 3.032 ± 0.0
1.348TrpThr: 1.348 ± 0.0
1.011TrpVal: 1.011 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
1.011TrpTyr: 1.011 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
3.706TyrAla: 3.706 ± 0.0
3.032TyrCys: 3.032 ± 0.0
3.706TyrAsp: 3.706 ± 0.0
2.358TyrGlu: 2.358 ± 0.0
2.022TyrPhe: 2.022 ± 0.0
4.38TyrGly: 4.38 ± 0.0
0.674TyrHis: 0.674 ± 0.0
4.38TyrIle: 4.38 ± 0.0
2.022TyrLys: 2.022 ± 0.0
2.358TyrLeu: 2.358 ± 0.0
1.685TyrMet: 1.685 ± 0.0
3.032TyrAsn: 3.032 ± 0.0
1.348TyrPro: 1.348 ± 0.0
2.022TyrGln: 2.022 ± 0.0
1.685TyrArg: 1.685 ± 0.0
3.032TyrSer: 3.032 ± 0.0
2.358TyrThr: 2.358 ± 0.0
2.358TyrVal: 2.358 ± 0.0
1.348TyrTrp: 1.348 ± 0.0
3.032TyrTyr: 3.032 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2969 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski