Phalacrocorax carbo (Great cormorant) (Pelecanus carbo)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria; Dinosauria;

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8990 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A093PD19|A0A093PD19_PHACA UPF0556 protein C19orf10 (Fragment) OS=Phalacrocorax carbo OX=9209 GN=N336_02048 PE=4 SV=1
FF1 pKa = 7.63LLPSRR6 pKa = 11.84LSWLEE11 pKa = 3.41NSGAGFSLDD20 pKa = 3.51YY21 pKa = 9.25PTISLHH27 pKa = 6.36AVSRR31 pKa = 11.84DD32 pKa = 3.07LNAYY36 pKa = 7.9PWEE39 pKa = 4.19HH40 pKa = 6.86LYY42 pKa = 11.74VMVNAKK48 pKa = 10.3FEE50 pKa = 4.48EE51 pKa = 4.5EE52 pKa = 4.09TKK54 pKa = 9.69EE55 pKa = 3.9APMAEE60 pKa = 4.2GEE62 pKa = 4.24EE63 pKa = 4.28EE64 pKa = 4.66EE65 pKa = 4.91EE66 pKa = 5.45DD67 pKa = 3.82SDD69 pKa = 6.17DD70 pKa = 3.89DD71 pKa = 4.15VEE73 pKa = 5.15PIAEE77 pKa = 4.09FRR79 pKa = 11.84FVPSDD84 pKa = 3.36KK85 pKa = 10.88SALEE89 pKa = 3.9AMFSAMCEE97 pKa = 4.27CQALHH102 pKa = 7.41PDD104 pKa = 4.21PDD106 pKa = 5.77DD107 pKa = 4.05EE108 pKa = 7.61DD109 pKa = 4.46SDD111 pKa = 3.76NDD113 pKa = 3.97YY114 pKa = 11.37EE115 pKa = 4.59GEE117 pKa = 4.16EE118 pKa = 4.41YY119 pKa = 10.56DD120 pKa = 4.4VEE122 pKa = 4.23AHH124 pKa = 6.13EE125 pKa = 5.43LEE127 pKa = 4.47QGDD130 pKa = 3.63IPSFYY135 pKa = 9.93TYY137 pKa = 11.03EE138 pKa = 4.17EE139 pKa = 4.58GLSHH143 pKa = 6.9LTAEE147 pKa = 4.71GQATLEE153 pKa = 4.11RR154 pKa = 11.84LEE156 pKa = 4.74GMLAQSVSSQYY167 pKa = 11.66NMAGVRR173 pKa = 11.84TEE175 pKa = 3.7DD176 pKa = 3.58SIRR179 pKa = 11.84EE180 pKa = 4.1FEE182 pKa = 5.37DD183 pKa = 3.48GMEE186 pKa = 3.92VDD188 pKa = 3.78IAPVVAGQFEE198 pKa = 4.42DD199 pKa = 5.26AEE201 pKa = 4.32VDD203 pKa = 3.59HH204 pKa = 7.08

Molecular weight: 22.92 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A093RGD1|A0A093RGD1_PHACA Protein WWC3 (Fragment) OS=Phalacrocorax carbo OX=9209 GN=N336_12111 PE=4 SV=1
MM1 pKa = 7.67AAQSAPKK8 pKa = 10.16VVLKK12 pKa = 10.04STTKK16 pKa = 9.35MSLNEE21 pKa = 4.25RR22 pKa = 11.84FTNMLKK28 pKa = 10.36NKK30 pKa = 9.73QPMPVNIRR38 pKa = 11.84ATMQQQQQLASARR51 pKa = 11.84NRR53 pKa = 11.84RR54 pKa = 11.84LAQQMEE60 pKa = 4.32NRR62 pKa = 11.84PSVQAALKK70 pKa = 10.37LKK72 pKa = 10.39QKK74 pKa = 9.42SLKK77 pKa = 9.72QRR79 pKa = 11.84LGKK82 pKa = 10.77SNIQARR88 pKa = 11.84LGRR91 pKa = 11.84PAGPLARR98 pKa = 11.84GAMGGRR104 pKa = 11.84GLSMGQRR111 pKa = 11.84GLPRR115 pKa = 11.84GAMRR119 pKa = 11.84GGRR122 pKa = 11.84GARR125 pKa = 11.84ALLRR129 pKa = 11.84GGVALRR135 pKa = 11.84GRR137 pKa = 11.84MGLRR141 pKa = 11.84RR142 pKa = 11.84GGLRR146 pKa = 11.84GRR148 pKa = 11.84GGPGRR153 pKa = 11.84GGLGRR158 pKa = 11.84GAMGRR163 pKa = 3.6

Molecular weight: 17.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8990

0

8990

3797346

31

5869

422.4

47.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.278 ± 0.023

2.233 ± 0.023

5.083 ± 0.017

7.221 ± 0.027

3.93 ± 0.018

5.761 ± 0.033

2.548 ± 0.015

5.111 ± 0.02

6.544 ± 0.028

9.681 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.268 ± 0.01

4.244 ± 0.016

5.174 ± 0.031

4.683 ± 0.022

5.089 ± 0.019

8.245 ± 0.037

5.441 ± 0.018

6.26 ± 0.021

1.177 ± 0.008

3.017 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski