Chryseobacterium taihuense

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Weeksellaceae; Chryseobacterium group; Chryseobacterium

Average proteome isoelectric point is 6.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3186 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1G9RVS5|A0A1G9RVS5_9FLAO Uncharacterized protein OS=Chryseobacterium taihuense OX=1141221 GN=SAMN05216273_11968 PE=4 SV=1
MM1 pKa = 7.56NKK3 pKa = 9.88QILDD7 pKa = 3.54FWVGDD12 pKa = 4.72FISEE16 pKa = 3.96DD17 pKa = 3.27DD18 pKa = 4.09FYY20 pKa = 11.78QFVEE24 pKa = 4.11EE25 pKa = 4.82DD26 pKa = 2.96EE27 pKa = 4.26NYY29 pKa = 10.41YY30 pKa = 10.18IKK32 pKa = 10.79EE33 pKa = 4.15EE34 pKa = 4.24SDD36 pKa = 3.22DD37 pKa = 4.16SYY39 pKa = 11.34ISKK42 pKa = 10.07FAEE45 pKa = 4.17SQDD48 pKa = 3.98TVWFDD53 pKa = 3.9QDD55 pKa = 3.08FLEE58 pKa = 4.59YY59 pKa = 10.7GFEE62 pKa = 3.98NSIQHH67 pKa = 5.33FAEE70 pKa = 4.4YY71 pKa = 10.76SFAEE75 pKa = 3.76QWLPVLVNRR84 pKa = 11.84INEE87 pKa = 4.1MNLFEE92 pKa = 4.58VNALIFVSHH101 pKa = 6.06GQIPQPKK108 pKa = 9.51SVEE111 pKa = 3.81NDD113 pKa = 3.24NFSLTYY119 pKa = 10.24AGGIEE124 pKa = 4.33FEE126 pKa = 4.53FF127 pKa = 5.66

Molecular weight: 15.12 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1G9M4N6|A0A1G9M4N6_9FLAO Valine--tRNA ligase OS=Chryseobacterium taihuense OX=1141221 GN=valS PE=3 SV=1
MM1 pKa = 7.84PSGKK5 pKa = 9.32KK6 pKa = 9.59RR7 pKa = 11.84KK8 pKa = 7.05RR9 pKa = 11.84HH10 pKa = 5.11KK11 pKa = 10.59VATHH15 pKa = 5.21KK16 pKa = 10.3RR17 pKa = 11.84KK18 pKa = 9.62KK19 pKa = 9.04RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84ANRR25 pKa = 11.84HH26 pKa = 4.5KK27 pKa = 10.78KK28 pKa = 9.37KK29 pKa = 10.83

Molecular weight: 3.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3186

0

3186

1015609

29

2348

318.8

36.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.059 ± 0.045

0.761 ± 0.014

5.355 ± 0.027

6.73 ± 0.045

5.551 ± 0.039

6.199 ± 0.046

1.64 ± 0.017

8.109 ± 0.039

8.366 ± 0.053

8.904 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.311 ± 0.02

6.609 ± 0.044

3.368 ± 0.026

3.537 ± 0.028

3.31 ± 0.027

6.634 ± 0.032

5.495 ± 0.055

5.924 ± 0.03

1.018 ± 0.015

4.119 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski