Streptococcus suis (strain 05ZYH33)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus suis

Average proteome isoelectric point is 6.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2178 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A4VSI4|A4VSI4_STRSY Uncharacterized protein OS=Streptococcus suis (strain 05ZYH33) OX=391295 GN=SSU05_0103 PE=4 SV=1
MM1 pKa = 7.38AHH3 pKa = 6.23HH4 pKa = 7.34HH5 pKa = 5.96DD6 pKa = 4.33HH7 pKa = 6.42EE8 pKa = 6.33HH9 pKa = 6.69DD10 pKa = 3.97HH11 pKa = 6.13NHH13 pKa = 7.13DD14 pKa = 3.56EE15 pKa = 4.62RR16 pKa = 11.84EE17 pKa = 4.28LITLVDD23 pKa = 3.81DD24 pKa = 4.31QGNEE28 pKa = 3.98TLFEE32 pKa = 4.24ILLTIDD38 pKa = 3.35GQEE41 pKa = 4.05EE42 pKa = 4.07FGKK45 pKa = 10.49NYY47 pKa = 10.43VLLIPASAEE56 pKa = 3.59EE57 pKa = 4.39DD58 pKa = 3.51EE59 pKa = 4.52NGEE62 pKa = 4.24VEE64 pKa = 4.13IQAYY68 pKa = 10.18SYY70 pKa = 11.02IEE72 pKa = 4.14NEE74 pKa = 4.13NGTEE78 pKa = 4.31GDD80 pKa = 3.87LQPIPEE86 pKa = 4.84DD87 pKa = 3.78ATAEE91 pKa = 3.53WDD93 pKa = 3.61MIEE96 pKa = 4.2EE97 pKa = 4.34VFNSFMEE104 pKa = 4.43EE105 pKa = 3.86EE106 pKa = 4.22

Molecular weight: 12.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A4VU46|A4VU46_STRSY Arsenate reductase and related proteins glutaredoxin family OS=Streptococcus suis (strain 05ZYH33) OX=391295 GN=SSU05_0669 PE=3 SV=1
MM1 pKa = 7.36IRR3 pKa = 11.84HH4 pKa = 5.96HH5 pKa = 7.05NYY7 pKa = 10.51LKK9 pKa = 10.51IFTFLLILLFIIFLLSLSIGYY30 pKa = 9.97SNSSFSDD37 pKa = 4.42FIDD40 pKa = 3.31IMSGRR45 pKa = 11.84ASSSTLLIIGRR56 pKa = 11.84IRR58 pKa = 11.84LPRR61 pKa = 11.84IIASIIGGASLALAGLLLQTLTRR84 pKa = 11.84NPLADD89 pKa = 3.62SGILGINAGAGLVVALFVGLSSKK112 pKa = 10.36ISPVLLSLMPLFAMMGGGLTIFLVYY137 pKa = 9.95WIARR141 pKa = 11.84KK142 pKa = 9.51KK143 pKa = 10.83LYY145 pKa = 10.37GIHH148 pKa = 7.15PARR151 pKa = 11.84LIITGVGISSMLSGIMVSIISQLDD175 pKa = 3.67DD176 pKa = 3.89FKK178 pKa = 11.15MEE180 pKa = 5.35YY181 pKa = 9.3IVQWLSGRR189 pKa = 11.84VNGGDD194 pKa = 2.96WKK196 pKa = 9.81TIAIYY201 pKa = 9.77TPLLLLVWMATFSRR215 pKa = 11.84SRR217 pKa = 11.84SLNIMNLNDD226 pKa = 3.53QTAMALGLHH235 pKa = 6.31LQRR238 pKa = 11.84EE239 pKa = 4.26RR240 pKa = 11.84RR241 pKa = 11.84ITLILATALASLSVILVGNITFVGLIAGHH270 pKa = 6.72IVRR273 pKa = 11.84KK274 pKa = 9.03WLGNDD279 pKa = 2.81HH280 pKa = 6.65RR281 pKa = 11.84VIIPATMIIGSFILLLADD299 pKa = 4.13TIGRR303 pKa = 11.84VLLVGTGIPTGIIVSLIGAPYY324 pKa = 9.79FLWLLKK330 pKa = 10.55QEE332 pKa = 4.42GG333 pKa = 3.56

Molecular weight: 36.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2178

0

2178

609028

30

2274

279.6

31.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.635 ± 0.061

0.597 ± 0.015

5.571 ± 0.046

7.15 ± 0.055

4.532 ± 0.043

6.601 ± 0.06

1.875 ± 0.023

7.189 ± 0.046

6.366 ± 0.052

10.161 ± 0.082

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.541 ± 0.029

4.359 ± 0.04

3.372 ± 0.038

4.244 ± 0.049

4.166 ± 0.041

6.126 ± 0.047

5.789 ± 0.053

7.015 ± 0.05

0.919 ± 0.018

3.793 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski