Streptococcus phage Javan444

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.36

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 52 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4D6B490|A0A4D6B490_9CAUD Antirepressor protein OS=Streptococcus phage Javan444 OX=2548170 GN=Javan444_0048 PE=4 SV=1
MM1 pKa = 8.07EE2 pKa = 5.02IRR4 pKa = 11.84QVSDD8 pKa = 3.04SVAIYY13 pKa = 10.84SDD15 pKa = 3.68GQRR18 pKa = 11.84LQVIHH23 pKa = 6.56NLGDD27 pKa = 3.62EE28 pKa = 5.11FILDD32 pKa = 3.57FDD34 pKa = 4.21FQIEE38 pKa = 4.31EE39 pKa = 4.27VVNIDD44 pKa = 4.18DD45 pKa = 4.06LTTHH49 pKa = 5.46VVGDD53 pKa = 3.7IVPIFKK59 pKa = 10.8VSGYY63 pKa = 9.37CSRR66 pKa = 11.84SGEE69 pKa = 4.07DD70 pKa = 3.13MYY72 pKa = 11.32RR73 pKa = 11.84LKK75 pKa = 10.36WAIRR79 pKa = 11.84QFEE82 pKa = 4.23IFEE85 pKa = 4.36QYY87 pKa = 11.21LNDD90 pKa = 3.72YY91 pKa = 8.1QTEE94 pKa = 4.14LVEE97 pKa = 4.05WLGNLGGEE105 pKa = 4.5DD106 pKa = 3.45VV107 pKa = 3.98

Molecular weight: 12.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4D6B7C7|A0A4D6B7C7_9CAUD Terminase large subunit OS=Streptococcus phage Javan444 OX=2548170 GN=Javan444_0025 PE=4 SV=1
MM1 pKa = 7.41GATVSVKK8 pKa = 10.16VDD10 pKa = 3.35LKK12 pKa = 11.18GIEE15 pKa = 4.36KK16 pKa = 10.08KK17 pKa = 10.87VSSAALAKK25 pKa = 10.35GKK27 pKa = 9.93LAIASQMKK35 pKa = 9.59MDD37 pKa = 4.22MTPFIPRR44 pKa = 11.84KK45 pKa = 9.65SGEE48 pKa = 4.14LSGSAQVSKK57 pKa = 11.26DD58 pKa = 3.22GIRR61 pKa = 11.84YY62 pKa = 6.35PGPYY66 pKa = 10.0ARR68 pKa = 11.84AQFYY72 pKa = 10.28GSSYY76 pKa = 10.43NKK78 pKa = 9.74YY79 pKa = 10.36RR80 pKa = 11.84SFTYY84 pKa = 10.12KK85 pKa = 10.47RR86 pKa = 11.84YY87 pKa = 5.44TTPGTGKK94 pKa = 10.27RR95 pKa = 11.84WDD97 pKa = 3.89LKK99 pKa = 11.18ASALHH104 pKa = 5.99IKK106 pKa = 10.19DD107 pKa = 2.95WGKK110 pKa = 10.65VGLRR114 pKa = 11.84AMGVKK119 pKa = 10.0AA120 pKa = 4.47

Molecular weight: 13.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

52

0

52

11566

43

1191

222.4

24.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.643 ± 0.854

0.372 ± 0.082

6.173 ± 0.439

6.865 ± 0.677

3.804 ± 0.194

7.219 ± 0.561

1.21 ± 0.153

6.64 ± 0.237

7.92 ± 0.576

7.807 ± 0.392

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.585 ± 0.221

5.732 ± 0.411

2.827 ± 0.156

4.116 ± 0.257

3.925 ± 0.258

6.934 ± 0.604

6.536 ± 0.441

6.389 ± 0.377

1.254 ± 0.144

4.046 ± 0.383
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski