Bambusicola thoracicus (Chinese bamboo-partridge) (Perdix thoracica)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Sauropsida; Sauria; Archelosauria; Archosauria;

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 17669 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P4SU70|A0A2P4SU70_BAMTH Uncharacterized protein OS=Bambusicola thoracicus OX=9083 GN=CIB84_008584 PE=4 SV=1
NN1 pKa = 7.6CPLLPNSGQEE11 pKa = 5.08DD12 pKa = 3.93FDD14 pKa = 5.41KK15 pKa = 11.13DD16 pKa = 3.96GKK18 pKa = 11.32GDD20 pKa = 3.67ACDD23 pKa = 4.44EE24 pKa = 4.89DD25 pKa = 5.03DD26 pKa = 6.11DD27 pKa = 5.28NDD29 pKa = 4.37GVEE32 pKa = 4.65DD33 pKa = 5.47DD34 pKa = 5.49KK35 pKa = 12.08DD36 pKa = 3.71NCPLLFNPRR45 pKa = 11.84QFDD48 pKa = 3.57YY49 pKa = 11.45DD50 pKa = 3.52KK51 pKa = 11.69DD52 pKa = 4.14EE53 pKa = 4.7VGDD56 pKa = 3.79RR57 pKa = 11.84CDD59 pKa = 3.2NCPYY63 pKa = 10.11VHH65 pKa = 6.82NPAQIDD71 pKa = 3.5TDD73 pKa = 3.98NNGEE77 pKa = 3.99GDD79 pKa = 3.81SCAVDD84 pKa = 3.25IDD86 pKa = 4.11GDD88 pKa = 4.29DD89 pKa = 3.67IFNEE93 pKa = 4.17RR94 pKa = 11.84DD95 pKa = 3.22NCPYY99 pKa = 10.71VYY101 pKa = 9.85NTDD104 pKa = 3.57QSDD107 pKa = 3.51TDD109 pKa = 3.82GDD111 pKa = 4.48GVGDD115 pKa = 3.71QCDD118 pKa = 4.06NCPLMHH124 pKa = 7.14NPDD127 pKa = 3.26QTDD130 pKa = 3.12ADD132 pKa = 3.89NDD134 pKa = 4.23LVGDD138 pKa = 3.7QCDD141 pKa = 3.64NNEE144 pKa = 5.1DD145 pKa = 3.49IDD147 pKa = 4.85EE148 pKa = 5.38DD149 pKa = 3.95GHH151 pKa = 6.99QNNQDD156 pKa = 3.29NCPYY160 pKa = 10.32IPNANQADD168 pKa = 3.79HH169 pKa = 7.42DD170 pKa = 4.64KK171 pKa = 11.17DD172 pKa = 4.07GKK174 pKa = 11.27GDD176 pKa = 3.62ACDD179 pKa = 4.6PDD181 pKa = 5.2DD182 pKa = 6.11DD183 pKa = 5.43NDD185 pKa = 5.38GIPDD189 pKa = 3.84DD190 pKa = 4.96RR191 pKa = 11.84DD192 pKa = 3.43NCRR195 pKa = 11.84LRR197 pKa = 11.84YY198 pKa = 9.88NPEE201 pKa = 3.86QEE203 pKa = 5.42DD204 pKa = 3.5SDD206 pKa = 4.25GDD208 pKa = 3.89GRR210 pKa = 11.84GDD212 pKa = 3.12ICKK215 pKa = 10.38DD216 pKa = 3.51DD217 pKa = 4.78FDD219 pKa = 6.91DD220 pKa = 6.6DD221 pKa = 4.41SVPDD225 pKa = 3.82IFDD228 pKa = 3.35VCPEE232 pKa = 3.87NNAISEE238 pKa = 4.09TDD240 pKa = 3.55FRR242 pKa = 11.84KK243 pKa = 9.59FQMVPLDD250 pKa = 3.85PKK252 pKa = 10.2GTAQIDD258 pKa = 3.99PNWVIRR264 pKa = 11.84HH265 pKa = 4.99QGKK268 pKa = 9.11EE269 pKa = 3.87LVQTANSDD277 pKa = 3.25PGIAVGYY284 pKa = 10.41DD285 pKa = 3.19EE286 pKa = 5.41FSSVDD291 pKa = 3.71FSGTFYY297 pKa = 11.53VNTDD301 pKa = 3.3RR302 pKa = 11.84DD303 pKa = 3.36DD304 pKa = 4.91DD305 pKa = 4.04YY306 pKa = 12.01AGFVFGYY313 pKa = 9.43QSSSRR318 pKa = 11.84FYY320 pKa = 10.37VLMWKK325 pKa = 9.65QVTQTYY331 pKa = 8.8WEE333 pKa = 4.7DD334 pKa = 3.53KK335 pKa = 7.69PTRR338 pKa = 11.84AYY340 pKa = 10.31GYY342 pKa = 9.8SGVSLKK348 pKa = 10.51VVNSTTGTGEE358 pKa = 4.03HH359 pKa = 6.41LRR361 pKa = 11.84NALWHH366 pKa = 6.19TGNTPGQVRR375 pKa = 11.84DD376 pKa = 4.29LKK378 pKa = 10.93LHH380 pKa = 5.95HH381 pKa = 7.02CGG383 pKa = 3.92

Molecular weight: 42.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P4SFI2|A0A2P4SFI2_BAMTH Uncharacterized protein OS=Bambusicola thoracicus OX=9083 GN=CIB84_013417 PE=3 SV=1
GG1 pKa = 7.03ARR3 pKa = 11.84RR4 pKa = 11.84SPRR7 pKa = 11.84AAAPAARR14 pKa = 11.84RR15 pKa = 11.84SAAPRR20 pKa = 11.84RR21 pKa = 11.84AAQPGSAAQRR31 pKa = 11.84PRR33 pKa = 11.84EE34 pKa = 3.96RR35 pKa = 11.84PRR37 pKa = 11.84GGRR40 pKa = 11.84GRR42 pKa = 11.84RR43 pKa = 11.84ARR45 pKa = 11.84VPPRR49 pKa = 11.84QLRR52 pKa = 11.84RR53 pKa = 11.84GLRR56 pKa = 11.84GVLLVRR62 pKa = 11.84RR63 pKa = 11.84APHH66 pKa = 5.59QGGVPPLRR74 pKa = 11.84HH75 pKa = 6.12PGAARR80 pKa = 11.84RR81 pKa = 11.84RR82 pKa = 3.88

Molecular weight: 8.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

17669

0

17669

6035687

8

7645

341.6

38.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.096 ± 0.024

2.319 ± 0.015

4.867 ± 0.013

7.171 ± 0.029

3.766 ± 0.016

6.23 ± 0.025

2.519 ± 0.01

4.579 ± 0.016

5.928 ± 0.025

9.772 ± 0.027

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.25 ± 0.008

3.819 ± 0.018

5.658 ± 0.025

4.605 ± 0.019

5.457 ± 0.018

8.322 ± 0.027

5.281 ± 0.016

6.32 ± 0.018

1.187 ± 0.008

2.843 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski