Paenibacillus psychroresistens

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6938 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6B8RJZ1|A0A6B8RJZ1_9BACL Ferredoxin--NADP reductase OS=Paenibacillus psychroresistens OX=1778678 GN=EHS13_14015 PE=3 SV=1
MM1 pKa = 7.79SIQNLIVNGGFEE13 pKa = 4.6TGTLAPWIPANTTITSLFSHH33 pKa = 6.68SGTFSARR40 pKa = 11.84LQGGPVTSYY49 pKa = 9.85IGQFVPVTQGDD60 pKa = 3.83SFEE63 pKa = 4.5ILISLAKK70 pKa = 10.64VGFLPAAPVIIQVFYY85 pKa = 10.71FDD87 pKa = 5.91SIFNLLGQGLFTNVPIDD104 pKa = 5.04RR105 pKa = 11.84IPTADD110 pKa = 2.99NHH112 pKa = 5.42TWLEE116 pKa = 4.25IYY118 pKa = 8.26QTTTPAPLGSTQAFVLIDD136 pKa = 3.86NLPQAGTADD145 pKa = 3.39ILVDD149 pKa = 4.8DD150 pKa = 4.7VALLAAGGSGSTGPTGATGATGDD173 pKa = 3.71TGAMGVTGATGAMGVAGVTGAMGVTGVTGAMGVTGVTGVTGATGDD218 pKa = 3.7TGVTGATGDD227 pKa = 3.7TGVTGATGDD236 pKa = 3.7TGVTGATGDD245 pKa = 3.7TGVTGATGDD254 pKa = 3.7TGVTGATGDD263 pKa = 3.58TGATGATGATGDD275 pKa = 3.96TGAMGATGVTGVTGATGDD293 pKa = 3.58TGATGATGTTGATGVTGSTGATGDD317 pKa = 3.39TGATGTTGVTGATGAMGVTGATGTTGATGDD347 pKa = 3.54TGATGTTGTTGTTGVTGATGTTGVTGATGAMGVTGATGTTGATGVTGATGDD398 pKa = 3.48TGATGVTGTTGVTGTTGVTGVTGVTGVTGATGATGATGATGTTGATGATGATGATGVTGATGATGATGAMGVTGVTGTTGATGDD482 pKa = 3.73TGATGATGATGVTGATGDD500 pKa = 3.58TGATGATGATGVTGATGATGVTGATGATGATGATGATGATGATGATGATGAIGDD554 pKa = 4.16TGVTGATGATGAVSSAYY571 pKa = 10.11AYY573 pKa = 10.35VFNLGVQGVGANVDD587 pKa = 3.87VIFSNNGPLVGGISHH602 pKa = 7.61IAGTAPVTILVAGNYY617 pKa = 8.76HH618 pKa = 5.85IQWSITVNQNIQTAYY633 pKa = 10.62AIVLNGATLPQTLFGFGVNSSANSFFQTAGHH664 pKa = 6.5SIITVPASATITLRR678 pKa = 11.84NVGFADD684 pKa = 3.75NLATSLDD691 pKa = 3.51GQQIVNASLEE701 pKa = 4.41IIKK704 pKa = 9.02LTLL707 pKa = 3.39

Molecular weight: 64.73 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6B8RUQ9|A0A6B8RUQ9_9BACL N-acetyltransferase OS=Paenibacillus psychroresistens OX=1778678 GN=EHS13_33140 PE=4 SV=1
MM1 pKa = 7.67EE2 pKa = 4.37PTFRR6 pKa = 11.84PNVRR10 pKa = 11.84KK11 pKa = 9.86RR12 pKa = 11.84KK13 pKa = 8.61KK14 pKa = 8.79NHH16 pKa = 4.94GFRR19 pKa = 11.84TRR21 pKa = 11.84MSTKK25 pKa = 9.13NGRR28 pKa = 11.84RR29 pKa = 11.84VIQARR34 pKa = 11.84RR35 pKa = 11.84LKK37 pKa = 10.52GRR39 pKa = 11.84KK40 pKa = 9.07KK41 pKa = 9.61LTAA44 pKa = 4.2

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6938

0

6938

2366348

25

6114

341.1

38.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.501 ± 0.036

0.738 ± 0.009

5.109 ± 0.022

6.248 ± 0.037

4.471 ± 0.023

6.767 ± 0.038

2.041 ± 0.015

7.82 ± 0.032

5.988 ± 0.03

10.069 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.675 ± 0.016

4.674 ± 0.03

3.809 ± 0.018

3.976 ± 0.022

3.975 ± 0.024

6.668 ± 0.027

5.817 ± 0.046

6.611 ± 0.024

1.334 ± 0.012

3.709 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski