Sinomicrobium oceani

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Sinomicrobium

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4212 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1K1QBR9|A0A1K1QBR9_9FLAO Alpha-L-fucosidase OS=Sinomicrobium oceani OX=1150368 GN=SAMN02927921_02443 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 10.37KK3 pKa = 9.66ILALVLVSALVFVSCEE19 pKa = 3.93GDD21 pKa = 3.18QGPPGQDD28 pKa = 3.1GLDD31 pKa = 3.67GLNGHH36 pKa = 6.57IFEE39 pKa = 5.59AGPVDD44 pKa = 4.99LSYY47 pKa = 11.61DD48 pKa = 3.65PATNLYY54 pKa = 10.23SAIINFADD62 pKa = 3.55EE63 pKa = 4.29TDD65 pKa = 4.37FEE67 pKa = 4.64ILDD70 pKa = 3.63TDD72 pKa = 3.52AVLVYY77 pKa = 10.08RR78 pKa = 11.84LQGSVEE84 pKa = 4.27FNDD87 pKa = 3.74GTTADD92 pKa = 3.59SWALLPLTYY101 pKa = 10.33TPDD104 pKa = 3.2EE105 pKa = 4.05GTFYY109 pKa = 10.83YY110 pKa = 10.28TFEE113 pKa = 4.37HH114 pKa = 6.78NYY116 pKa = 9.17IDD118 pKa = 3.58TEE120 pKa = 4.06IFIDD124 pKa = 4.52GNFDD128 pKa = 3.63LSGLASEE135 pKa = 4.57YY136 pKa = 10.18TQDD139 pKa = 3.19QIFRR143 pKa = 11.84IVIIPNPDD151 pKa = 3.12AQGLNVSNFDD161 pKa = 3.77EE162 pKa = 4.34VLKK165 pKa = 10.9ALNPEE170 pKa = 4.02QIKK173 pKa = 10.56QIEE176 pKa = 4.37IKK178 pKa = 10.72NN179 pKa = 3.68

Molecular weight: 19.79 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1K1QG68|A0A1K1QG68_9FLAO Phosphate-selective porin O and P OS=Sinomicrobium oceani OX=1150368 GN=SAMN02927921_02506 PE=4 SV=1
MM1 pKa = 7.0LTADD5 pKa = 3.87RR6 pKa = 11.84VMLTADD12 pKa = 3.71RR13 pKa = 11.84LMLTANRR20 pKa = 11.84TGLTAKK26 pKa = 10.18RR27 pKa = 11.84VMSTANRR34 pKa = 11.84VVLTAKK40 pKa = 10.4RR41 pKa = 11.84VGLTANRR48 pKa = 11.84IGLTANRR55 pKa = 11.84VVLTANRR62 pKa = 11.84AMLPANRR69 pKa = 11.84VMPTAKK75 pKa = 10.05RR76 pKa = 11.84VGLTANRR83 pKa = 11.84IVLTANRR90 pKa = 11.84VVLTANRR97 pKa = 11.84VVLTANRR104 pKa = 11.84VVLTANRR111 pKa = 11.84VVLTANRR118 pKa = 11.84VGLTANRR125 pKa = 11.84VVLTANRR132 pKa = 11.84IGLTANRR139 pKa = 11.84VVLTANRR146 pKa = 11.84VRR148 pKa = 11.84LTVNRR153 pKa = 11.84IGLTANRR160 pKa = 11.84IRR162 pKa = 11.84LTANRR167 pKa = 11.84TGLVVNTIPP176 pKa = 4.74

Molecular weight: 19.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4212

0

4212

1479298

21

3749

351.2

39.59

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.901 ± 0.033

0.746 ± 0.011

5.704 ± 0.026

6.735 ± 0.039

4.834 ± 0.028

7.162 ± 0.038

2.021 ± 0.02

6.973 ± 0.033

6.531 ± 0.048

9.127 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.354 ± 0.018

5.077 ± 0.037

3.844 ± 0.021

3.3 ± 0.02

4.719 ± 0.029

6.12 ± 0.031

5.846 ± 0.031

6.462 ± 0.029

1.201 ± 0.014

4.343 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski