Clostridium phage phiCTP1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 86 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D9ZND9|D9ZND9_9CAUD Hypothetical phage protein OS=Clostridium phage phiCTP1 OX=871584 GN=phiCTP1_gp15 PE=4 SV=1
MM1 pKa = 7.76NDD3 pKa = 3.24LEE5 pKa = 4.48LLKK8 pKa = 10.55FLIMEE13 pKa = 4.35SKK15 pKa = 10.81YY16 pKa = 10.69PYY18 pKa = 10.48FSDD21 pKa = 6.02DD22 pKa = 4.36DD23 pKa = 3.93LQKK26 pKa = 11.31YY27 pKa = 10.69LDD29 pKa = 3.78VNKK32 pKa = 10.75GNVYY36 pKa = 8.89LTASQLCLMKK46 pKa = 9.8MDD48 pKa = 4.08NEE50 pKa = 4.1KK51 pKa = 10.88SITVGPITIQNPDD64 pKa = 2.67ASYY67 pKa = 9.0WQNLSLQYY75 pKa = 10.9ADD77 pKa = 5.21KK78 pKa = 10.99AATDD82 pKa = 3.74DD83 pKa = 3.92TSNGGTGGYY92 pKa = 8.45YY93 pKa = 9.98RR94 pKa = 11.84NYY96 pKa = 9.15MDD98 pKa = 5.39RR99 pKa = 11.84ADD101 pKa = 3.85GQQ103 pKa = 3.6

Molecular weight: 11.71 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D9ZNL0|D9ZNL0_9CAUD Hypothetical phage protein OS=Clostridium phage phiCTP1 OX=871584 GN=phiCTP1_gp86 PE=4 SV=1
MM1 pKa = 7.81IYY3 pKa = 10.04LGKK6 pKa = 10.74GGVFVATKK14 pKa = 9.9IYY16 pKa = 10.33DD17 pKa = 3.51KK18 pKa = 11.13QGFSILRR25 pKa = 11.84AGDD28 pKa = 3.42GFIVYY33 pKa = 10.21NNSKK37 pKa = 10.37AFKK40 pKa = 9.24EE41 pKa = 4.5GHH43 pKa = 4.97SHH45 pKa = 6.44LRR47 pKa = 11.84NYY49 pKa = 8.48SACIRR54 pKa = 11.84VIYY57 pKa = 9.44CIRR60 pKa = 11.84HH61 pKa = 4.58KK62 pKa = 10.49KK63 pKa = 8.46IPKK66 pKa = 7.88RR67 pKa = 11.84TSFYY71 pKa = 10.64FLQSLIRR78 pKa = 11.84VASDD82 pKa = 3.17DD83 pKa = 3.91DD84 pKa = 4.57YY85 pKa = 11.62KK86 pKa = 11.76VKK88 pKa = 10.6VQALIDD94 pKa = 3.59VRR96 pKa = 11.84VQKK99 pKa = 10.68GKK101 pKa = 10.7KK102 pKa = 8.74RR103 pKa = 11.84GYY105 pKa = 8.94YY106 pKa = 9.97NNRR109 pKa = 11.84FF110 pKa = 3.45

Molecular weight: 12.79 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

86

0

86

18423

28

1029

214.2

24.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.481 ± 0.497

1.482 ± 0.145

6.894 ± 0.305

5.395 ± 0.306

3.941 ± 0.182

6.253 ± 0.363

1.46 ± 0.112

7.702 ± 0.263

9.097 ± 0.395

8.701 ± 0.237

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.692 ± 0.11

6.839 ± 0.167

2.785 ± 0.169

3.105 ± 0.121

3.279 ± 0.213

5.309 ± 0.324

6.541 ± 0.34

6.459 ± 0.187

0.955 ± 0.095

4.63 ± 0.259
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski