Amino acid dipepetide frequency for Cryphonectria hypovirus 1 (strain EP713) (CHV-1/EP713) (Chestnut blight fungus hypovirulence-associated virus)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.867AlaAla: 6.867 ± 2.787
1.057AlaCys: 1.057 ± 0.49
4.49AlaAsp: 4.49 ± 0.591
6.867AlaGlu: 6.867 ± 2.04
2.905AlaPhe: 2.905 ± 0.892
6.339AlaGly: 6.339 ± 0.702
1.321AlaHis: 1.321 ± 0.613
3.698AlaIle: 3.698 ± 2.765
5.018AlaLys: 5.018 ± 1.405
6.867AlaLeu: 6.867 ± 2.04
2.377AlaMet: 2.377 ± 1.103
2.113AlaAsn: 2.113 ± 0.981
2.113AlaPro: 2.113 ± 0.234
3.17AlaGln: 3.17 ± 0.769
6.075AlaArg: 6.075 ± 4.649
3.17AlaSer: 3.17 ± 0.769
4.49AlaThr: 4.49 ± 0.156
5.547AlaVal: 5.547 ± 1.16
1.849AlaTrp: 1.849 ± 0.858
1.585AlaTyr: 1.585 ± 0.011
0.0AlaXaa: 0.0 ± 0.0
Cys
0.264CysAla: 0.264 ± 0.123
0.0CysCys: 0.0 ± 0.0
0.528CysAsp: 0.528 ± 0.245
0.528CysGlu: 0.528 ± 0.245
0.528CysPhe: 0.528 ± 0.245
1.057CysGly: 1.057 ± 0.256
0.264CysHis: 0.264 ± 0.123
0.792CysIle: 0.792 ± 1.126
1.321CysLys: 1.321 ± 0.134
1.057CysLeu: 1.057 ± 0.49
0.264CysMet: 0.264 ± 0.123
0.264CysAsn: 0.264 ± 0.123
0.0CysPro: 0.0 ± 0.0
0.264CysGln: 0.264 ± 0.624
1.321CysArg: 1.321 ± 0.134
1.585CysSer: 1.585 ± 0.758
1.057CysThr: 1.057 ± 0.49
1.057CysVal: 1.057 ± 1.003
0.0CysTrp: 0.0 ± 0.0
0.792CysTyr: 0.792 ± 0.379
0.0CysXaa: 0.0 ± 0.0
Asp
3.698AspAla: 3.698 ± 2.765
0.0AspCys: 0.0 ± 0.0
1.585AspAsp: 1.585 ± 0.736
3.698AspGlu: 3.698 ± 1.716
2.377AspPhe: 2.377 ± 0.357
4.49AspGly: 4.49 ± 0.903
1.321AspHis: 1.321 ± 0.134
3.434AspIle: 3.434 ± 1.594
2.113AspLys: 2.113 ± 0.234
3.17AspLeu: 3.17 ± 0.724
1.585AspMet: 1.585 ± 0.736
2.905AspAsn: 2.905 ± 1.349
4.754AspPro: 4.754 ± 3.021
1.585AspGln: 1.585 ± 0.736
4.226AspArg: 4.226 ± 1.215
4.226AspSer: 4.226 ± 1.026
2.641AspThr: 2.641 ± 0.479
3.434AspVal: 3.434 ± 0.847
1.057AspTrp: 1.057 ± 0.49
3.434AspTyr: 3.434 ± 0.1
0.0AspXaa: 0.0 ± 0.0
Glu
4.754GluAla: 4.754 ± 0.034
0.528GluCys: 0.528 ± 0.502
3.962GluAsp: 3.962 ± 1.839
5.547GluGlu: 5.547 ± 1.081
2.113GluPhe: 2.113 ± 0.513
2.113GluGly: 2.113 ± 0.981
1.849GluHis: 1.849 ± 0.635
4.226GluIle: 4.226 ± 0.468
2.113GluLys: 2.113 ± 0.513
7.396GluLeu: 7.396 ± 0.445
1.057GluMet: 1.057 ± 0.49
2.641GluAsn: 2.641 ± 1.226
3.434GluPro: 3.434 ± 0.847
1.849GluGln: 1.849 ± 0.635
3.17GluArg: 3.17 ± 0.724
1.057GluSer: 1.057 ± 0.256
2.113GluThr: 2.113 ± 0.234
4.49GluVal: 4.49 ± 0.591
1.057GluTrp: 1.057 ± 0.49
2.113GluTyr: 2.113 ± 0.513
0.0GluXaa: 0.0 ± 0.0
Phe
5.547PheAla: 5.547 ± 0.334
0.264PheCys: 0.264 ± 0.123
2.377PheAsp: 2.377 ± 0.357
3.17PheGlu: 3.17 ± 0.724
2.377PhePhe: 2.377 ± 1.103
3.434PheGly: 3.434 ± 1.394
2.113PheHis: 2.113 ± 0.981
3.17PheIle: 3.17 ± 0.724
1.585PheLys: 1.585 ± 0.736
3.962PheLeu: 3.962 ± 1.092
1.849PheMet: 1.849 ± 0.437
1.057PheAsn: 1.057 ± 0.256
1.057PhePro: 1.057 ± 0.49
1.057PheGln: 1.057 ± 0.256
3.434PheArg: 3.434 ± 0.647
1.585PheSer: 1.585 ± 0.736
1.321PheThr: 1.321 ± 0.613
2.905PheVal: 2.905 ± 0.145
1.585PheTrp: 1.585 ± 0.736
1.849PheTyr: 1.849 ± 0.111
0.0PheXaa: 0.0 ± 0.0
Gly
2.641GlyAla: 2.641 ± 0.479
1.849GlyCys: 1.849 ± 0.111
2.641GlyAsp: 2.641 ± 0.268
1.849GlyGlu: 1.849 ± 0.858
2.641GlyPhe: 2.641 ± 0.479
3.962GlyGly: 3.962 ± 0.345
1.321GlyHis: 1.321 ± 0.613
4.49GlyIle: 4.49 ± 2.084
5.811GlyLys: 5.811 ± 1.203
6.867GlyLeu: 6.867 ± 0.547
2.377GlyMet: 2.377 ± 0.345
1.321GlyAsn: 1.321 ± 0.613
1.321GlyPro: 1.321 ± 0.134
2.905GlyGln: 2.905 ± 0.145
6.603GlyArg: 6.603 ± 2.91
4.226GlySer: 4.226 ± 1.773
2.113GlyThr: 2.113 ± 0.234
3.434GlyVal: 3.434 ± 0.847
1.321GlyTrp: 1.321 ± 0.881
1.585GlyTyr: 1.585 ± 0.758
0.0GlyXaa: 0.0 ± 0.0
His
1.057HisAla: 1.057 ± 0.49
0.264HisCys: 0.264 ± 0.123
1.057HisAsp: 1.057 ± 0.49
1.585HisGlu: 1.585 ± 0.736
1.057HisPhe: 1.057 ± 0.256
2.377HisGly: 2.377 ± 1.137
1.057HisHis: 1.057 ± 0.49
1.057HisIle: 1.057 ± 0.49
1.585HisLys: 1.585 ± 0.758
3.434HisLeu: 3.434 ± 0.1
0.528HisMet: 0.528 ± 0.245
1.321HisAsn: 1.321 ± 0.134
1.321HisPro: 1.321 ± 0.134
1.057HisGln: 1.057 ± 0.49
0.528HisArg: 0.528 ± 0.245
0.792HisSer: 0.792 ± 0.379
1.585HisThr: 1.585 ± 0.736
3.17HisVal: 3.17 ± 0.769
1.057HisTrp: 1.057 ± 0.49
0.792HisTyr: 0.792 ± 0.368
0.0HisXaa: 0.0 ± 0.0
Ile
3.17IleAla: 3.17 ± 0.022
0.792IleCys: 0.792 ± 0.368
2.641IleAsp: 2.641 ± 1.226
2.905IleGlu: 2.905 ± 0.145
1.849IlePhe: 1.849 ± 0.858
4.226IleGly: 4.226 ± 0.279
1.057IleHis: 1.057 ± 0.49
1.849IleIle: 1.849 ± 0.858
2.641IleLys: 2.641 ± 0.479
5.018IleLeu: 5.018 ± 1.583
1.057IleMet: 1.057 ± 0.49
1.585IleAsn: 1.585 ± 0.736
3.434IlePro: 3.434 ± 1.594
1.849IleGln: 1.849 ± 1.382
5.018IleArg: 5.018 ± 1.405
2.905IleSer: 2.905 ± 0.602
2.377IleThr: 2.377 ± 0.39
3.698IleVal: 3.698 ± 1.271
0.528IleTrp: 0.528 ± 0.502
1.321IleTyr: 1.321 ± 0.613
0.0IleXaa: 0.0 ± 0.0
Lys
4.226LysAla: 4.226 ± 0.279
0.264LysCys: 0.264 ± 0.624
3.17LysAsp: 3.17 ± 0.022
2.905LysGlu: 2.905 ± 0.602
2.641LysPhe: 2.641 ± 0.268
2.905LysGly: 2.905 ± 0.602
0.792LysHis: 0.792 ± 0.368
3.17LysIle: 3.17 ± 0.769
2.641LysLys: 2.641 ± 1.015
6.867LysLeu: 6.867 ± 0.947
0.264LysMet: 0.264 ± 0.123
1.057LysAsn: 1.057 ± 0.49
2.905LysPro: 2.905 ± 0.892
1.321LysGln: 1.321 ± 0.134
3.698LysArg: 3.698 ± 0.223
3.698LysSer: 3.698 ± 0.524
2.905LysThr: 2.905 ± 0.145
2.641LysVal: 2.641 ± 0.268
0.792LysTrp: 0.792 ± 0.368
2.113LysTyr: 2.113 ± 0.981
0.0LysXaa: 0.0 ± 0.0
Leu
7.132LeuAla: 7.132 ± 3.411
1.321LeuCys: 1.321 ± 0.134
4.226LeuAsp: 4.226 ± 0.279
4.754LeuGlu: 4.754 ± 1.46
4.226LeuPhe: 4.226 ± 1.215
3.17LeuGly: 3.17 ± 0.724
2.377LeuHis: 2.377 ± 0.357
1.849LeuIle: 1.849 ± 0.858
5.547LeuLys: 5.547 ± 1.081
9.245LeuLeu: 9.245 ± 2.05
1.585LeuMet: 1.585 ± 0.736
2.113LeuAsn: 2.113 ± 0.513
7.66LeuPro: 7.66 ± 1.315
2.641LeuGln: 2.641 ± 0.268
8.188LeuArg: 8.188 ± 4.415
6.339LeuSer: 6.339 ± 0.045
3.17LeuThr: 3.17 ± 0.724
8.716LeuVal: 8.716 ± 1.058
2.113LeuTrp: 2.113 ± 0.513
2.641LeuTyr: 2.641 ± 1.226
0.0LeuXaa: 0.0 ± 0.0
Met
3.434MetAla: 3.434 ± 0.647
0.0MetCys: 0.0 ± 0.0
1.849MetAsp: 1.849 ± 0.858
0.792MetGlu: 0.792 ± 0.368
0.528MetPhe: 0.528 ± 0.245
0.528MetGly: 0.528 ± 0.245
0.264MetHis: 0.264 ± 0.123
1.849MetIle: 1.849 ± 0.111
0.792MetLys: 0.792 ± 0.368
1.585MetLeu: 1.585 ± 0.736
0.264MetMet: 0.264 ± 0.123
0.264MetAsn: 0.264 ± 0.123
2.113MetPro: 2.113 ± 0.981
1.057MetGln: 1.057 ± 0.49
1.057MetArg: 1.057 ± 0.49
1.057MetSer: 1.057 ± 0.256
1.057MetThr: 1.057 ± 0.256
1.057MetVal: 1.057 ± 0.49
1.585MetTrp: 1.585 ± 0.736
1.321MetTyr: 1.321 ± 0.613
0.0MetXaa: 0.0 ± 0.0
Asn
1.057AsnAla: 1.057 ± 0.49
0.792AsnCys: 0.792 ± 0.368
1.321AsnAsp: 1.321 ± 0.134
2.113AsnGlu: 2.113 ± 0.981
1.585AsnPhe: 1.585 ± 0.011
2.113AsnGly: 2.113 ± 0.234
2.113AsnHis: 2.113 ± 0.981
1.585AsnIle: 1.585 ± 0.758
1.057AsnLys: 1.057 ± 1.003
3.962AsnLeu: 3.962 ± 1.092
0.528AsnMet: 0.528 ± 0.245
0.528AsnAsn: 0.528 ± 0.245
3.698AsnPro: 3.698 ± 0.223
1.321AsnGln: 1.321 ± 0.134
2.905AsnArg: 2.905 ± 1.349
0.528AsnSer: 0.528 ± 0.245
1.849AsnThr: 1.849 ± 0.858
2.377AsnVal: 2.377 ± 0.39
1.585AsnTrp: 1.585 ± 0.011
1.321AsnTyr: 1.321 ± 0.613
0.0AsnXaa: 0.0 ± 0.0
Pro
4.226ProAla: 4.226 ± 1.026
0.792ProCys: 0.792 ± 0.379
2.905ProAsp: 2.905 ± 0.602
3.17ProGlu: 3.17 ± 0.724
3.698ProPhe: 3.698 ± 0.97
5.283ProGly: 5.283 ± 0.211
1.057ProHis: 1.057 ± 0.49
1.849ProIle: 1.849 ± 0.858
1.849ProLys: 1.849 ± 0.858
4.226ProLeu: 4.226 ± 0.279
0.792ProMet: 0.792 ± 0.368
1.585ProAsn: 1.585 ± 0.736
3.698ProPro: 3.698 ± 0.223
2.113ProGln: 2.113 ± 0.513
6.075ProArg: 6.075 ± 1.326
5.547ProSer: 5.547 ± 1.16
4.754ProThr: 4.754 ± 0.034
5.018ProVal: 5.018 ± 0.658
0.528ProTrp: 0.528 ± 0.245
2.377ProTyr: 2.377 ± 0.357
0.0ProXaa: 0.0 ± 0.0
Gln
3.434GlnAla: 3.434 ± 0.1
0.792GlnCys: 0.792 ± 0.379
2.641GlnAsp: 2.641 ± 1.015
1.321GlnGlu: 1.321 ± 0.881
2.377GlnPhe: 2.377 ± 0.357
2.905GlnGly: 2.905 ± 0.892
0.264GlnHis: 0.264 ± 0.123
1.321GlnIle: 1.321 ± 0.134
1.057GlnLys: 1.057 ± 0.49
2.641GlnLeu: 2.641 ± 0.268
0.264GlnMet: 0.264 ± 0.123
1.585GlnAsn: 1.585 ± 0.736
2.641GlnPro: 2.641 ± 1.226
0.528GlnGln: 0.528 ± 0.245
1.849GlnArg: 1.849 ± 0.635
3.17GlnSer: 3.17 ± 0.022
1.321GlnThr: 1.321 ± 0.134
2.377GlnVal: 2.377 ± 0.39
1.057GlnTrp: 1.057 ± 0.256
1.057GlnTyr: 1.057 ± 0.49
0.0GlnXaa: 0.0 ± 0.0
Arg
5.547ArgAla: 5.547 ± 2.653
0.528ArgCys: 0.528 ± 0.502
6.339ArgAsp: 6.339 ± 3.032
2.641ArgGlu: 2.641 ± 0.479
5.283ArgPhe: 5.283 ± 0.211
2.905ArgGly: 2.905 ± 0.145
2.113ArgHis: 2.113 ± 2.007
3.434ArgIle: 3.434 ± 0.847
3.434ArgLys: 3.434 ± 1.394
6.339ArgLeu: 6.339 ± 2.285
1.321ArgMet: 1.321 ± 0.881
3.434ArgAsn: 3.434 ± 1.394
4.754ArgPro: 4.754 ± 1.527
2.905ArgGln: 2.905 ± 0.602
5.283ArgArg: 5.283 ± 6.51
7.132ArgSer: 7.132 ± 0.323
2.641ArgThr: 2.641 ± 2.508
3.698ArgVal: 3.698 ± 0.524
0.792ArgTrp: 0.792 ± 0.379
4.754ArgTyr: 4.754 ± 1.46
0.0ArgXaa: 0.0 ± 0.0
Ser
6.075SerAla: 6.075 ± 2.408
0.792SerCys: 0.792 ± 0.379
3.434SerAsp: 3.434 ± 0.1
3.962SerGlu: 3.962 ± 0.402
2.113SerPhe: 2.113 ± 0.513
4.226SerGly: 4.226 ± 1.215
1.057SerHis: 1.057 ± 0.256
3.962SerIle: 3.962 ± 0.402
2.905SerLys: 2.905 ± 0.602
3.434SerLeu: 3.434 ± 1.394
1.321SerMet: 1.321 ± 0.613
2.377SerAsn: 2.377 ± 0.357
1.849SerPro: 1.849 ± 0.858
2.641SerGln: 2.641 ± 0.479
3.434SerArg: 3.434 ± 2.887
4.754SerSer: 4.754 ± 0.034
3.434SerThr: 3.434 ± 0.647
5.018SerVal: 5.018 ± 0.658
2.377SerTrp: 2.377 ± 0.39
2.377SerTyr: 2.377 ± 0.357
0.0SerXaa: 0.0 ± 0.0
Thr
4.754ThrAla: 4.754 ± 2.207
0.264ThrCys: 0.264 ± 0.123
1.585ThrAsp: 1.585 ± 0.736
2.377ThrGlu: 2.377 ± 1.137
2.641ThrPhe: 2.641 ± 1.226
3.434ThrGly: 3.434 ± 0.647
1.057ThrHis: 1.057 ± 0.49
2.113ThrIle: 2.113 ± 0.234
2.905ThrLys: 2.905 ± 0.892
2.377ThrLeu: 2.377 ± 0.39
1.321ThrMet: 1.321 ± 0.613
1.849ThrAsn: 1.849 ± 0.111
3.698ThrPro: 3.698 ± 0.524
1.321ThrGln: 1.321 ± 0.613
4.226ThrArg: 4.226 ± 1.026
3.698ThrSer: 3.698 ± 1.271
3.17ThrThr: 3.17 ± 2.263
4.226ThrVal: 4.226 ± 0.279
1.321ThrTrp: 1.321 ± 0.613
1.585ThrTyr: 1.585 ± 0.736
0.0ThrXaa: 0.0 ± 0.0
Val
5.547ValAla: 5.547 ± 2.653
1.321ValCys: 1.321 ± 0.134
4.754ValAsp: 4.754 ± 1.527
4.49ValGlu: 4.49 ± 1.337
2.905ValPhe: 2.905 ± 1.349
2.113ValGly: 2.113 ± 1.26
2.905ValHis: 2.905 ± 1.639
3.962ValIle: 3.962 ± 1.092
2.641ValLys: 2.641 ± 0.268
5.018ValLeu: 5.018 ± 0.089
1.585ValMet: 1.585 ± 0.736
3.434ValAsn: 3.434 ± 0.647
6.867ValPro: 6.867 ± 0.2
1.849ValGln: 1.849 ± 0.111
3.962ValArg: 3.962 ± 1.148
3.698ValSer: 3.698 ± 0.223
5.018ValThr: 5.018 ± 0.089
3.962ValVal: 3.962 ± 2.642
2.113ValTrp: 2.113 ± 0.234
3.17ValTyr: 3.17 ± 0.724
0.0ValXaa: 0.0 ± 0.0
Trp
2.113TrpAla: 2.113 ± 0.234
1.057TrpCys: 1.057 ± 0.256
1.321TrpAsp: 1.321 ± 0.613
1.321TrpGlu: 1.321 ± 0.134
0.264TrpPhe: 0.264 ± 0.123
1.057TrpGly: 1.057 ± 0.49
0.792TrpHis: 0.792 ± 0.368
1.057TrpIle: 1.057 ± 0.256
1.585TrpLys: 1.585 ± 0.011
1.849TrpLeu: 1.849 ± 0.858
0.264TrpMet: 0.264 ± 0.123
0.792TrpAsn: 0.792 ± 0.379
1.321TrpPro: 1.321 ± 0.613
1.321TrpGln: 1.321 ± 0.613
2.377TrpArg: 2.377 ± 1.137
1.057TrpSer: 1.057 ± 0.256
0.792TrpThr: 0.792 ± 0.368
2.113TrpVal: 2.113 ± 0.234
1.321TrpTrp: 1.321 ± 0.613
0.528TrpTyr: 0.528 ± 0.245
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.377TyrAla: 2.377 ± 0.357
0.264TyrCys: 0.264 ± 0.624
2.905TyrAsp: 2.905 ± 1.349
1.585TyrGlu: 1.585 ± 0.758
1.585TyrPhe: 1.585 ± 0.011
2.905TyrGly: 2.905 ± 1.349
1.585TyrHis: 1.585 ± 0.011
1.057TyrIle: 1.057 ± 0.49
2.377TyrLys: 2.377 ± 1.103
3.698TyrLeu: 3.698 ± 0.223
1.585TyrMet: 1.585 ± 0.011
2.113TyrAsn: 2.113 ± 0.981
2.905TyrPro: 2.905 ± 1.349
1.849TyrGln: 1.849 ± 0.635
1.849TyrArg: 1.849 ± 0.111
1.321TyrSer: 1.321 ± 0.613
2.113TyrThr: 2.113 ± 0.981
2.377TyrVal: 2.377 ± 0.357
0.264TyrTrp: 0.264 ± 0.123
0.264TyrTyr: 0.264 ± 0.123
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 2 proteins (3787 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski