Capybara microvirus Cap3_SP_641

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8Z7|A0A4P8W8Z7_9VIRU Minor capsid protein OS=Capybara microvirus Cap3_SP_641 OX=2585485 PE=4 SV=1
MM1 pKa = 7.26NAVSDD6 pKa = 4.04EE7 pKa = 4.23TALRR11 pKa = 11.84CNDD14 pKa = 3.55PSLTQQQFKK23 pKa = 10.91EE24 pKa = 4.06EE25 pKa = 3.99SDD27 pKa = 3.35INNIVDD33 pKa = 4.48LFMKK37 pKa = 9.77TGHH40 pKa = 6.95LPTPVSMPQYY50 pKa = 10.25VDD52 pKa = 3.3YY53 pKa = 11.32EE54 pKa = 4.79GVFDD58 pKa = 5.12FQSAMNAVRR67 pKa = 11.84QADD70 pKa = 4.14EE71 pKa = 3.91NFMRR75 pKa = 11.84MDD77 pKa = 3.41AKK79 pKa = 10.73LRR81 pKa = 11.84ARR83 pKa = 11.84FHH85 pKa = 6.67NSPQEE90 pKa = 3.9FLEE93 pKa = 5.28FFADD97 pKa = 3.76PNNTEE102 pKa = 3.67EE103 pKa = 4.31AVRR106 pKa = 11.84LGLAIAKK113 pKa = 9.16PKK115 pKa = 10.5EE116 pKa = 3.94FTSPVVEE123 pKa = 4.2SAKK126 pKa = 10.83ADD128 pKa = 3.59GAASS132 pKa = 3.37

Molecular weight: 14.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5D6|A0A4P8W5D6_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_641 OX=2585485 PE=3 SV=1
MM1 pKa = 7.25CTALWQHH8 pKa = 6.85PSHH11 pKa = 6.76GPTKK15 pKa = 10.39CGQCVEE21 pKa = 4.27CRR23 pKa = 11.84LAYY26 pKa = 9.97SRR28 pKa = 11.84EE29 pKa = 3.38WAIRR33 pKa = 11.84ITHH36 pKa = 5.98EE37 pKa = 4.0QQMHH41 pKa = 6.22KK42 pKa = 10.07VSCMLNLTYY51 pKa = 10.74DD52 pKa = 3.92DD53 pKa = 3.65EE54 pKa = 4.95HH55 pKa = 8.01LPKK58 pKa = 10.38HH59 pKa = 5.35GQLHH63 pKa = 6.26KK64 pKa = 10.88EE65 pKa = 3.82HH66 pKa = 6.3LQKK69 pKa = 10.66FFKK72 pKa = 10.52RR73 pKa = 11.84MRR75 pKa = 11.84KK76 pKa = 9.02AGYY79 pKa = 8.83KK80 pKa = 9.44FRR82 pKa = 11.84YY83 pKa = 7.94VASGEE88 pKa = 4.16YY89 pKa = 10.49GDD91 pKa = 4.08VSRR94 pKa = 11.84RR95 pKa = 11.84PHH97 pKa = 4.95FHH99 pKa = 6.29IALFGVDD106 pKa = 4.27FDD108 pKa = 4.72ADD110 pKa = 3.61RR111 pKa = 11.84VPFGRR116 pKa = 11.84SGGDD120 pKa = 2.79RR121 pKa = 11.84TYY123 pKa = 9.44TSSRR127 pKa = 11.84VLHH130 pKa = 6.3LWPFGNHH137 pKa = 7.51LIGTLNFEE145 pKa = 4.02SAAYY149 pKa = 8.06IARR152 pKa = 11.84YY153 pKa = 8.94IMKK156 pKa = 10.13KK157 pKa = 9.76IKK159 pKa = 10.26GPNASPVPLFNDD171 pKa = 3.73DD172 pKa = 3.37EE173 pKa = 4.57TGEE176 pKa = 4.28VVMPNPEE183 pKa = 3.95FLLVSKK189 pKa = 10.83GRR191 pKa = 11.84GKK193 pKa = 10.75GQGIGGSWFRR203 pKa = 11.84DD204 pKa = 3.39YY205 pKa = 11.64FMTDD209 pKa = 3.26VFPHH213 pKa = 6.57AAVITPQRR221 pKa = 11.84SKK223 pKa = 11.5APVPRR228 pKa = 11.84YY229 pKa = 10.04YY230 pKa = 9.65KK231 pKa = 10.24TLLKK235 pKa = 10.7EE236 pKa = 4.16LGSDD240 pKa = 4.49LALDD244 pKa = 3.55MQFRR248 pKa = 11.84SSVRR252 pKa = 11.84ADD254 pKa = 3.29MEE256 pKa = 4.19LEE258 pKa = 3.66RR259 pKa = 11.84RR260 pKa = 11.84MLEE263 pKa = 4.02DD264 pKa = 3.19QPVRR268 pKa = 11.84KK269 pKa = 9.02IARR272 pKa = 11.84QIVSQSRR279 pKa = 11.84NNLSKK284 pKa = 10.93RR285 pKa = 11.84ILL287 pKa = 3.61

Molecular weight: 33.06 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1330

85

552

266.0

29.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.624 ± 1.97

0.602 ± 0.337

5.564 ± 0.621

3.835 ± 0.925

5.263 ± 0.793

7.594 ± 1.025

2.03 ± 0.779

4.06 ± 0.353

3.985 ± 0.897

8.346 ± 0.524

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.632 ± 0.512

5.94 ± 0.871

5.038 ± 0.699

5.714 ± 0.877

5.414 ± 1.004

7.82 ± 0.687

5.338 ± 0.809

6.692 ± 1.05

0.977 ± 0.284

3.534 ± 0.459
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski