Phialemoniopsis curvata

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Xylariomycetidae; Xylariales; Xylariales incertae sedis; Phialemoniopsis

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 12104 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A507B8F9|A0A507B8F9_9PEZI Uncharacterized protein OS=Phialemoniopsis curvata OX=1093900 GN=E0L32_004112 PE=3 SV=1
MM1 pKa = 7.72LWMHH5 pKa = 6.33WMLWMHH11 pKa = 6.27WMHH14 pKa = 6.03WMLWILWMLWMLWMLWMLWMLWMHH38 pKa = 6.25WMLWMHH44 pKa = 6.94WLDD47 pKa = 4.11ALSALDD53 pKa = 4.06TLDD56 pKa = 5.24ALDD59 pKa = 5.44ALDD62 pKa = 5.79ALDD65 pKa = 5.79ALDD68 pKa = 5.79ALDD71 pKa = 5.79ALDD74 pKa = 5.79ALDD77 pKa = 5.79ALDD80 pKa = 5.38ALDD83 pKa = 4.65ALGSTGEE90 pKa = 4.06YY91 pKa = 10.88NMYY94 pKa = 10.91

Molecular weight: 11.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A507AZM2|A0A507AZM2_9PEZI Uncharacterized protein OS=Phialemoniopsis curvata OX=1093900 GN=E0L32_008706 PE=4 SV=1
MM1 pKa = 7.41AQPASTPAPQHH12 pKa = 5.1QRR14 pKa = 11.84ANSTNPRR21 pKa = 11.84PGTSAFPRR29 pKa = 11.84ANSQSQTRR37 pKa = 11.84PQQQQQQQQQQQQQQQQQQNRR58 pKa = 11.84TRR60 pKa = 11.84SKK62 pKa = 8.06RR63 pKa = 11.84TTGARR68 pKa = 11.84SSTGSGTSATAAPARR83 pKa = 11.84PPAPSTKK90 pKa = 9.9QVNQTFSITMMSSPVNPVPFPLPIPLGISMLVMPTGGKK128 pKa = 9.56SGSQSGRR135 pKa = 11.84GG136 pKa = 3.36

Molecular weight: 14.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

12104

0

12104

6446461

34

5835

532.6

58.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.615 ± 0.024

1.284 ± 0.008

5.813 ± 0.016

6.004 ± 0.021

3.619 ± 0.011

7.417 ± 0.021

2.4 ± 0.009

4.476 ± 0.014

4.476 ± 0.019

8.823 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.194 ± 0.008

3.292 ± 0.01

6.234 ± 0.025

4.014 ± 0.015

6.317 ± 0.019

7.877 ± 0.025

5.717 ± 0.018

6.279 ± 0.015

1.487 ± 0.008

2.662 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski