Saitozyma podzolica

Taxonomy: cellular organisms; Eukaryota; <

Average proteome isoelectric point is 6.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10205 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A427XL15|A0A427XL15_9TREE MFS domain-containing protein OS=Saitozyma podzolica OX=1890683 GN=EHS25_007968 PE=4 SV=1
MM1 pKa = 7.21ATVNSVSSMMSGMSSVSRR19 pKa = 11.84PLPMHH24 pKa = 6.47TAATPQPEE32 pKa = 4.39APTLGLGLDD41 pKa = 4.04LNLNPDD47 pKa = 3.34VGEE50 pKa = 4.45DD51 pKa = 3.28TDD53 pKa = 4.36GRR55 pKa = 11.84SDD57 pKa = 3.86PYY59 pKa = 10.36MGSPSSARR67 pKa = 11.84LQALNCSSSFLGFCMGSTITIPSTNTTLNPIFPEE101 pKa = 4.19LNPDD105 pKa = 2.87VDD107 pKa = 3.5IYY109 pKa = 7.95TARR112 pKa = 11.84MEE114 pKa = 4.36DD115 pKa = 3.01EE116 pKa = 4.44MMFSFSPQGVPGNSGDD132 pKa = 3.29VDD134 pKa = 3.61GFYY137 pKa = 10.34DD138 pKa = 4.04YY139 pKa = 11.24PFTPVMSTLPLPLPALGSLGPSQVNTANEE168 pKa = 4.49GTTMAATSQFLGDD181 pKa = 3.61SS182 pKa = 3.7

Molecular weight: 19.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A427Y3E9|A0A427Y3E9_9TREE Uncharacterized protein OS=Saitozyma podzolica OX=1890683 GN=EHS25_003738 PE=4 SV=1
MM1 pKa = 7.31SRR3 pKa = 11.84SQVGEE8 pKa = 3.77PLARR12 pKa = 11.84ASPIGTYY19 pKa = 10.47GPPCQSHH26 pKa = 6.36SLSDD30 pKa = 3.89QPPPLHH36 pKa = 6.78PPPHH40 pKa = 6.59LPPHH44 pKa = 6.29VGLSGVHH51 pKa = 5.54AHH53 pKa = 6.61HH54 pKa = 7.19PSSYY58 pKa = 8.88KK59 pKa = 9.71QSNGSVHH66 pKa = 6.86AGHH69 pKa = 7.23PHH71 pKa = 4.91THH73 pKa = 7.19ALPALPAPWRR83 pKa = 11.84STCRR87 pKa = 11.84TFPSPVAAGEE97 pKa = 4.04MSPTTFKK104 pKa = 11.22GGVAVKK110 pKa = 10.34RR111 pKa = 11.84GTAATKK117 pKa = 10.2GSQRR121 pKa = 11.84PARR124 pKa = 11.84DD125 pKa = 3.65HH126 pKa = 6.69EE127 pKa = 4.85SGSEE131 pKa = 3.95DD132 pKa = 3.55EE133 pKa = 4.63DD134 pKa = 3.88KK135 pKa = 11.06KK136 pKa = 11.45GKK138 pKa = 10.33SKK140 pKa = 11.29LEE142 pKa = 3.57NRR144 pKa = 11.84RR145 pKa = 11.84EE146 pKa = 4.07KK147 pKa = 11.16NRR149 pKa = 11.84VKK151 pKa = 10.3QRR153 pKa = 11.84KK154 pKa = 8.5LRR156 pKa = 11.84MRR158 pKa = 11.84RR159 pKa = 11.84ANHH162 pKa = 5.29IVEE165 pKa = 5.0LEE167 pKa = 3.98TSITSLRR174 pKa = 11.84SEE176 pKa = 4.2HH177 pKa = 6.49TSLQSAFSVSQLRR190 pKa = 11.84EE191 pKa = 3.54AHH193 pKa = 6.04LEE195 pKa = 3.83SRR197 pKa = 11.84IRR199 pKa = 11.84DD200 pKa = 3.38LGLALFSDD208 pKa = 4.68GLSGEE213 pKa = 4.06VDD215 pKa = 3.0ATRR218 pKa = 11.84RR219 pKa = 11.84AWSVVSSSSTPTGPLGCEE237 pKa = 4.19GGGKK241 pKa = 9.6RR242 pKa = 11.84PRR244 pKa = 11.84TISGRR249 pKa = 11.84DD250 pKa = 3.52PLNTLAQAALPLEE263 pKa = 4.58HH264 pKa = 6.86ARR266 pKa = 11.84EE267 pKa = 4.35GATLPPLVSQWNRR280 pKa = 11.84PSSRR284 pKa = 11.84HH285 pKa = 5.57SEE287 pKa = 3.98SDD289 pKa = 2.95EE290 pKa = 4.2KK291 pKa = 10.88KK292 pKa = 10.42CKK294 pKa = 10.2RR295 pKa = 11.84EE296 pKa = 3.95ALDD299 pKa = 3.75APLYY303 pKa = 10.16PPTFGKK309 pKa = 10.72SSTSRR314 pKa = 11.84GYY316 pKa = 10.71SRR318 pKa = 11.84TRR320 pKa = 11.84EE321 pKa = 3.81HH322 pKa = 6.38SPRR325 pKa = 11.84RR326 pKa = 11.84IPVEE330 pKa = 3.71PTTAGASSAGISEE343 pKa = 4.37PLVNPSLRR351 pKa = 11.84SSRR354 pKa = 11.84VASAPLPPLAPSSSSNSLFTTPEE377 pKa = 3.39WAAPSPGFIRR387 pKa = 11.84IEE389 pKa = 4.18DD390 pKa = 4.3LLSLMGPAAASLRR403 pKa = 11.84SQAHH407 pKa = 4.63TPKK410 pKa = 10.51KK411 pKa = 9.54RR412 pKa = 11.84DD413 pKa = 3.33QEE415 pKa = 4.17RR416 pKa = 11.84EE417 pKa = 3.76RR418 pKa = 11.84EE419 pKa = 4.54GISDD423 pKa = 3.56EE424 pKa = 4.04AVLRR428 pKa = 11.84RR429 pKa = 11.84RR430 pKa = 11.84GFGGRR435 pKa = 11.84PVPRR439 pKa = 11.84GRR441 pKa = 11.84PRR443 pKa = 11.84EE444 pKa = 4.25SRR446 pKa = 11.84CHH448 pKa = 6.04ASSCGRR454 pKa = 11.84CRR456 pKa = 11.84PRR458 pKa = 11.84FAVPVIIPPPDD469 pKa = 3.8PPVSLLLCPHH479 pKa = 6.96RR480 pKa = 11.84PLAPAALVPFSLAIPFATPLAPDD503 pKa = 3.8TANHH507 pKa = 6.25SKK509 pKa = 10.57LALSRR514 pKa = 11.84CPTSPHH520 pKa = 6.44HH521 pKa = 6.52LLPSTTRR528 pKa = 11.84PAAPQPLTRR537 pKa = 11.84RR538 pKa = 11.84RR539 pKa = 11.84KK540 pKa = 4.89THH542 pKa = 5.52RR543 pKa = 11.84RR544 pKa = 11.84RR545 pKa = 11.84PILLFRR551 pKa = 11.84RR552 pKa = 11.84RR553 pKa = 11.84ASRR556 pKa = 11.84ALSHH560 pKa = 6.31HH561 pKa = 6.45HH562 pKa = 6.89PAGQGHH568 pKa = 7.16PAPPQRR574 pKa = 11.84NADD577 pKa = 3.54SCLEE581 pKa = 4.69LISHH585 pKa = 6.71TLASVRR591 pKa = 11.84EE592 pKa = 4.42SGDD595 pKa = 3.49PPDD598 pKa = 4.26AEE600 pKa = 3.97AWEE603 pKa = 4.47LQDD606 pKa = 5.55SYY608 pKa = 11.24WDD610 pKa = 3.33TARR613 pKa = 11.84ASFRR617 pKa = 11.84IPASHH622 pKa = 6.88HH623 pKa = 5.92SFSILSQSEE632 pKa = 3.91HH633 pKa = 6.21AGARR637 pKa = 11.84LHH639 pKa = 6.55ALSSALFSRR648 pKa = 11.84VPRR651 pKa = 11.84TNLTRR656 pKa = 11.84SPFVDD661 pKa = 3.62LRR663 pKa = 11.84RR664 pKa = 11.84RR665 pKa = 11.84LSLRR669 pKa = 11.84YY670 pKa = 8.95IAIGSRR676 pKa = 11.84PRR678 pKa = 11.84HH679 pKa = 4.7RR680 pKa = 11.84TEE682 pKa = 4.76ALASTPGTRR691 pKa = 11.84VRR693 pKa = 11.84LEE695 pKa = 3.99PLGHH699 pKa = 4.73QTSRR703 pKa = 11.84RR704 pKa = 11.84NDD706 pKa = 3.11IQVITLLGSQATGLANAEE724 pKa = 3.85YY725 pKa = 10.46DD726 pKa = 3.76LTVVSLASKK735 pKa = 9.49DD736 pKa = 3.59ACSMSLPDD744 pKa = 4.52QDD746 pKa = 4.75GNPPRR751 pKa = 11.84LVNKK755 pKa = 10.21YY756 pKa = 9.06LDD758 pKa = 3.63SVADD762 pKa = 3.41HH763 pKa = 5.78TTRR766 pKa = 11.84SGTAQPAISRR776 pKa = 11.84STHH779 pKa = 5.61CLLPRR784 pKa = 11.84RR785 pKa = 11.84HH786 pKa = 7.07DD787 pKa = 3.62EE788 pKa = 4.27RR789 pKa = 11.84QHH791 pKa = 5.99HH792 pKa = 6.36QGLCLLEE799 pKa = 4.45TGNDD803 pKa = 3.14TWNIQPDD810 pKa = 4.12GQTVEE815 pKa = 4.3PLPFAGEE822 pKa = 4.68GPQLL826 pKa = 3.61

Molecular weight: 89.84 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10205

0

10205

5014707

50

4841

491.4

53.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.624 ± 0.026

1.044 ± 0.008

5.508 ± 0.018

6.08 ± 0.022

3.34 ± 0.015

7.84 ± 0.021

2.393 ± 0.011

4.247 ± 0.015

4.057 ± 0.02

8.982 ± 0.028

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.114 ± 0.01

2.879 ± 0.011

6.95 ± 0.034

3.535 ± 0.019

6.442 ± 0.022

8.728 ± 0.031

5.958 ± 0.017

6.415 ± 0.016

1.487 ± 0.01

2.376 ± 0.011
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski