Amino acid dipepetide frequency for Ceratobasidium endornavirus D

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
6.606AlaAla: 6.606 ± 0.0
1.258AlaCys: 1.258 ± 0.0
3.303AlaAsp: 3.303 ± 0.0
6.134AlaGlu: 6.134 ± 0.0
1.416AlaPhe: 1.416 ± 0.0
5.505AlaGly: 5.505 ± 0.0
1.573AlaHis: 1.573 ± 0.0
5.348AlaIle: 5.348 ± 0.0
3.146AlaLys: 3.146 ± 0.0
8.336AlaLeu: 8.336 ± 0.0
2.988AlaMet: 2.988 ± 0.0
3.775AlaAsn: 3.775 ± 0.0
2.831AlaPro: 2.831 ± 0.0
2.517AlaGln: 2.517 ± 0.0
4.247AlaArg: 4.247 ± 0.0
5.505AlaSer: 5.505 ± 0.0
6.291AlaThr: 6.291 ± 0.0
6.92AlaVal: 6.92 ± 0.0
1.416AlaTrp: 1.416 ± 0.0
2.045AlaTyr: 2.045 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.786CysAla: 0.786 ± 0.0
0.786CysCys: 0.786 ± 0.0
1.258CysAsp: 1.258 ± 0.0
0.944CysGlu: 0.944 ± 0.0
1.101CysPhe: 1.101 ± 0.0
0.629CysGly: 0.629 ± 0.0
1.258CysHis: 1.258 ± 0.0
0.629CysIle: 0.629 ± 0.0
0.944CysLys: 0.944 ± 0.0
0.629CysLeu: 0.629 ± 0.0
0.157CysMet: 0.157 ± 0.0
1.101CysAsn: 1.101 ± 0.0
0.315CysPro: 0.315 ± 0.0
1.258CysGln: 1.258 ± 0.0
0.944CysArg: 0.944 ± 0.0
1.887CysSer: 1.887 ± 0.0
1.416CysThr: 1.416 ± 0.0
0.944CysVal: 0.944 ± 0.0
0.472CysTrp: 0.472 ± 0.0
0.629CysTyr: 0.629 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
4.404AspAla: 4.404 ± 0.0
1.101AspCys: 1.101 ± 0.0
5.19AspAsp: 5.19 ± 0.0
4.404AspGlu: 4.404 ± 0.0
1.416AspPhe: 1.416 ± 0.0
5.662AspGly: 5.662 ± 0.0
1.887AspHis: 1.887 ± 0.0
2.202AspIle: 2.202 ± 0.0
2.045AspLys: 2.045 ± 0.0
6.449AspLeu: 6.449 ± 0.0
1.73AspMet: 1.73 ± 0.0
1.573AspAsn: 1.573 ± 0.0
3.617AspPro: 3.617 ± 0.0
1.73AspGln: 1.73 ± 0.0
2.831AspArg: 2.831 ± 0.0
2.517AspSer: 2.517 ± 0.0
2.988AspThr: 2.988 ± 0.0
3.775AspVal: 3.775 ± 0.0
1.101AspTrp: 1.101 ± 0.0
1.258AspTyr: 1.258 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.561GluAla: 4.561 ± 0.0
0.786GluCys: 0.786 ± 0.0
2.359GluAsp: 2.359 ± 0.0
4.089GluGlu: 4.089 ± 0.0
1.258GluPhe: 1.258 ± 0.0
3.617GluGly: 3.617 ± 0.0
2.202GluHis: 2.202 ± 0.0
2.359GluIle: 2.359 ± 0.0
1.887GluLys: 1.887 ± 0.0
5.19GluLeu: 5.19 ± 0.0
2.202GluMet: 2.202 ± 0.0
2.045GluAsn: 2.045 ± 0.0
2.831GluPro: 2.831 ± 0.0
2.359GluGln: 2.359 ± 0.0
4.404GluArg: 4.404 ± 0.0
3.46GluSer: 3.46 ± 0.0
2.359GluThr: 2.359 ± 0.0
4.718GluVal: 4.718 ± 0.0
1.573GluTrp: 1.573 ± 0.0
2.045GluTyr: 2.045 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.887PheAla: 1.887 ± 0.0
0.315PheCys: 0.315 ± 0.0
1.887PheAsp: 1.887 ± 0.0
1.73PheGlu: 1.73 ± 0.0
0.786PhePhe: 0.786 ± 0.0
1.573PheGly: 1.573 ± 0.0
0.944PheHis: 0.944 ± 0.0
2.045PheIle: 2.045 ± 0.0
1.101PheLys: 1.101 ± 0.0
1.258PheLeu: 1.258 ± 0.0
0.472PheMet: 0.472 ± 0.0
1.416PheAsn: 1.416 ± 0.0
0.944PhePro: 0.944 ± 0.0
0.157PheGln: 0.157 ± 0.0
1.101PheArg: 1.101 ± 0.0
2.359PheSer: 2.359 ± 0.0
2.202PheThr: 2.202 ± 0.0
2.045PheVal: 2.045 ± 0.0
0.629PheTrp: 0.629 ± 0.0
0.786PheTyr: 0.786 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
5.819GlyAla: 5.819 ± 0.0
1.573GlyCys: 1.573 ± 0.0
3.775GlyAsp: 3.775 ± 0.0
4.718GlyGlu: 4.718 ± 0.0
1.573GlyPhe: 1.573 ± 0.0
5.977GlyGly: 5.977 ± 0.0
2.202GlyHis: 2.202 ± 0.0
3.146GlyIle: 3.146 ± 0.0
4.089GlyLys: 4.089 ± 0.0
5.819GlyLeu: 5.819 ± 0.0
1.73GlyMet: 1.73 ± 0.0
4.247GlyAsn: 4.247 ± 0.0
2.517GlyPro: 2.517 ± 0.0
2.674GlyGln: 2.674 ± 0.0
2.517GlyArg: 2.517 ± 0.0
5.19GlySer: 5.19 ± 0.0
5.348GlyThr: 5.348 ± 0.0
6.291GlyVal: 6.291 ± 0.0
1.101GlyTrp: 1.101 ± 0.0
1.887GlyTyr: 1.887 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.831HisAla: 2.831 ± 0.0
0.629HisCys: 0.629 ± 0.0
2.517HisAsp: 2.517 ± 0.0
1.416HisGlu: 1.416 ± 0.0
0.629HisPhe: 0.629 ± 0.0
1.887HisGly: 1.887 ± 0.0
0.786HisHis: 0.786 ± 0.0
1.416HisIle: 1.416 ± 0.0
1.258HisLys: 1.258 ± 0.0
2.674HisLeu: 2.674 ± 0.0
0.944HisMet: 0.944 ± 0.0
2.045HisAsn: 2.045 ± 0.0
1.887HisPro: 1.887 ± 0.0
0.472HisGln: 0.472 ± 0.0
1.101HisArg: 1.101 ± 0.0
3.146HisSer: 3.146 ± 0.0
2.202HisThr: 2.202 ± 0.0
1.887HisVal: 1.887 ± 0.0
0.629HisTrp: 0.629 ± 0.0
0.944HisTyr: 0.944 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.617IleAla: 3.617 ± 0.0
0.629IleCys: 0.629 ± 0.0
3.303IleAsp: 3.303 ± 0.0
1.73IleGlu: 1.73 ± 0.0
0.944IlePhe: 0.944 ± 0.0
4.404IleGly: 4.404 ± 0.0
2.359IleHis: 2.359 ± 0.0
3.146IleIle: 3.146 ± 0.0
3.932IleLys: 3.932 ± 0.0
2.674IleLeu: 2.674 ± 0.0
1.73IleMet: 1.73 ± 0.0
3.617IleAsn: 3.617 ± 0.0
2.831IlePro: 2.831 ± 0.0
1.101IleGln: 1.101 ± 0.0
3.617IleArg: 3.617 ± 0.0
2.988IleSer: 2.988 ± 0.0
2.988IleThr: 2.988 ± 0.0
1.73IleVal: 1.73 ± 0.0
0.157IleTrp: 0.157 ± 0.0
1.416IleTyr: 1.416 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.988LysAla: 2.988 ± 0.0
1.101LysCys: 1.101 ± 0.0
1.416LysAsp: 1.416 ± 0.0
1.73LysGlu: 1.73 ± 0.0
1.101LysPhe: 1.101 ± 0.0
3.617LysGly: 3.617 ± 0.0
1.101LysHis: 1.101 ± 0.0
2.045LysIle: 2.045 ± 0.0
2.674LysLys: 2.674 ± 0.0
4.089LysLeu: 4.089 ± 0.0
0.944LysMet: 0.944 ± 0.0
2.831LysAsn: 2.831 ± 0.0
2.517LysPro: 2.517 ± 0.0
1.258LysGln: 1.258 ± 0.0
2.674LysArg: 2.674 ± 0.0
3.146LysSer: 3.146 ± 0.0
2.359LysThr: 2.359 ± 0.0
4.404LysVal: 4.404 ± 0.0
0.315LysTrp: 0.315 ± 0.0
1.73LysTyr: 1.73 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
8.336LeuAla: 8.336 ± 0.0
1.258LeuCys: 1.258 ± 0.0
5.662LeuAsp: 5.662 ± 0.0
4.876LeuGlu: 4.876 ± 0.0
2.359LeuPhe: 2.359 ± 0.0
5.977LeuGly: 5.977 ± 0.0
1.887LeuHis: 1.887 ± 0.0
4.247LeuIle: 4.247 ± 0.0
3.775LeuLys: 3.775 ± 0.0
7.864LeuLeu: 7.864 ± 0.0
2.831LeuMet: 2.831 ± 0.0
3.146LeuAsn: 3.146 ± 0.0
3.46LeuPro: 3.46 ± 0.0
3.775LeuGln: 3.775 ± 0.0
5.348LeuArg: 5.348 ± 0.0
6.92LeuSer: 6.92 ± 0.0
5.977LeuThr: 5.977 ± 0.0
7.707LeuVal: 7.707 ± 0.0
0.944LeuTrp: 0.944 ± 0.0
2.674LeuTyr: 2.674 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
3.303MetAla: 3.303 ± 0.0
0.629MetCys: 0.629 ± 0.0
0.944MetAsp: 0.944 ± 0.0
2.045MetGlu: 2.045 ± 0.0
1.101MetPhe: 1.101 ± 0.0
1.258MetGly: 1.258 ± 0.0
1.887MetHis: 1.887 ± 0.0
1.887MetIle: 1.887 ± 0.0
0.944MetLys: 0.944 ± 0.0
3.146MetLeu: 3.146 ± 0.0
0.629MetMet: 0.629 ± 0.0
0.944MetAsn: 0.944 ± 0.0
0.786MetPro: 0.786 ± 0.0
0.786MetGln: 0.786 ± 0.0
2.045MetArg: 2.045 ± 0.0
2.359MetSer: 2.359 ± 0.0
1.73MetThr: 1.73 ± 0.0
2.045MetVal: 2.045 ± 0.0
0.629MetTrp: 0.629 ± 0.0
1.258MetTyr: 1.258 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.775AsnAla: 3.775 ± 0.0
1.101AsnCys: 1.101 ± 0.0
2.359AsnAsp: 2.359 ± 0.0
1.416AsnGlu: 1.416 ± 0.0
0.944AsnPhe: 0.944 ± 0.0
2.045AsnGly: 2.045 ± 0.0
0.944AsnHis: 0.944 ± 0.0
2.202AsnIle: 2.202 ± 0.0
2.831AsnLys: 2.831 ± 0.0
4.247AsnLeu: 4.247 ± 0.0
1.573AsnMet: 1.573 ± 0.0
2.674AsnAsn: 2.674 ± 0.0
2.674AsnPro: 2.674 ± 0.0
1.73AsnGln: 1.73 ± 0.0
3.146AsnArg: 3.146 ± 0.0
2.988AsnSer: 2.988 ± 0.0
2.359AsnThr: 2.359 ± 0.0
2.517AsnVal: 2.517 ± 0.0
1.416AsnTrp: 1.416 ± 0.0
1.573AsnTyr: 1.573 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.146ProAla: 3.146 ± 0.0
0.786ProCys: 0.786 ± 0.0
2.517ProAsp: 2.517 ± 0.0
3.46ProGlu: 3.46 ± 0.0
1.73ProPhe: 1.73 ± 0.0
3.617ProGly: 3.617 ± 0.0
1.416ProHis: 1.416 ± 0.0
2.045ProIle: 2.045 ± 0.0
2.517ProLys: 2.517 ± 0.0
4.089ProLeu: 4.089 ± 0.0
0.944ProMet: 0.944 ± 0.0
1.887ProAsn: 1.887 ± 0.0
3.146ProPro: 3.146 ± 0.0
2.359ProGln: 2.359 ± 0.0
2.359ProArg: 2.359 ± 0.0
3.775ProSer: 3.775 ± 0.0
3.617ProThr: 3.617 ± 0.0
3.46ProVal: 3.46 ± 0.0
0.786ProTrp: 0.786 ± 0.0
1.887ProTyr: 1.887 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.517GlnAla: 2.517 ± 0.0
0.472GlnCys: 0.472 ± 0.0
1.73GlnAsp: 1.73 ± 0.0
0.629GlnGlu: 0.629 ± 0.0
0.472GlnPhe: 0.472 ± 0.0
2.831GlnGly: 2.831 ± 0.0
1.101GlnHis: 1.101 ± 0.0
1.258GlnIle: 1.258 ± 0.0
0.629GlnLys: 0.629 ± 0.0
4.718GlnLeu: 4.718 ± 0.0
0.786GlnMet: 0.786 ± 0.0
1.101GlnAsn: 1.101 ± 0.0
2.359GlnPro: 2.359 ± 0.0
2.202GlnGln: 2.202 ± 0.0
2.045GlnArg: 2.045 ± 0.0
2.045GlnSer: 2.045 ± 0.0
2.359GlnThr: 2.359 ± 0.0
2.831GlnVal: 2.831 ± 0.0
0.786GlnTrp: 0.786 ± 0.0
1.73GlnTyr: 1.73 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
5.662ArgAla: 5.662 ± 0.0
1.101ArgCys: 1.101 ± 0.0
2.988ArgAsp: 2.988 ± 0.0
2.202ArgGlu: 2.202 ± 0.0
1.258ArgPhe: 1.258 ± 0.0
4.247ArgGly: 4.247 ± 0.0
2.359ArgHis: 2.359 ± 0.0
2.831ArgIle: 2.831 ± 0.0
1.416ArgLys: 1.416 ± 0.0
5.348ArgLeu: 5.348 ± 0.0
1.258ArgMet: 1.258 ± 0.0
2.045ArgAsn: 2.045 ± 0.0
3.303ArgPro: 3.303 ± 0.0
1.258ArgGln: 1.258 ± 0.0
2.202ArgArg: 2.202 ± 0.0
3.146ArgSer: 3.146 ± 0.0
3.146ArgThr: 3.146 ± 0.0
5.662ArgVal: 5.662 ± 0.0
0.786ArgTrp: 0.786 ± 0.0
1.73ArgTyr: 1.73 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
5.819SerAla: 5.819 ± 0.0
0.944SerCys: 0.944 ± 0.0
4.247SerAsp: 4.247 ± 0.0
5.033SerGlu: 5.033 ± 0.0
1.573SerPhe: 1.573 ± 0.0
6.134SerGly: 6.134 ± 0.0
1.73SerHis: 1.73 ± 0.0
2.359SerIle: 2.359 ± 0.0
2.831SerLys: 2.831 ± 0.0
6.134SerLeu: 6.134 ± 0.0
1.887SerMet: 1.887 ± 0.0
2.359SerAsn: 2.359 ± 0.0
2.674SerPro: 2.674 ± 0.0
2.674SerGln: 2.674 ± 0.0
2.988SerArg: 2.988 ± 0.0
3.932SerSer: 3.932 ± 0.0
5.977SerThr: 5.977 ± 0.0
4.876SerVal: 4.876 ± 0.0
2.045SerTrp: 2.045 ± 0.0
2.517SerTyr: 2.517 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
5.505ThrAla: 5.505 ± 0.0
0.944ThrCys: 0.944 ± 0.0
3.303ThrAsp: 3.303 ± 0.0
4.089ThrGlu: 4.089 ± 0.0
2.359ThrPhe: 2.359 ± 0.0
4.876ThrGly: 4.876 ± 0.0
2.202ThrHis: 2.202 ± 0.0
3.775ThrIle: 3.775 ± 0.0
2.517ThrLys: 2.517 ± 0.0
7.078ThrLeu: 7.078 ± 0.0
2.988ThrMet: 2.988 ± 0.0
2.831ThrAsn: 2.831 ± 0.0
4.561ThrPro: 4.561 ± 0.0
1.416ThrGln: 1.416 ± 0.0
2.988ThrArg: 2.988 ± 0.0
3.617ThrSer: 3.617 ± 0.0
5.819ThrThr: 5.819 ± 0.0
5.505ThrVal: 5.505 ± 0.0
0.786ThrTrp: 0.786 ± 0.0
2.045ThrTyr: 2.045 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
5.977ValAla: 5.977 ± 0.0
1.258ValCys: 1.258 ± 0.0
5.505ValAsp: 5.505 ± 0.0
3.46ValGlu: 3.46 ± 0.0
1.573ValPhe: 1.573 ± 0.0
5.19ValGly: 5.19 ± 0.0
1.573ValHis: 1.573 ± 0.0
3.932ValIle: 3.932 ± 0.0
4.089ValLys: 4.089 ± 0.0
5.505ValLeu: 5.505 ± 0.0
2.988ValMet: 2.988 ± 0.0
2.517ValAsn: 2.517 ± 0.0
4.404ValPro: 4.404 ± 0.0
2.674ValGln: 2.674 ± 0.0
4.718ValArg: 4.718 ± 0.0
6.606ValSer: 6.606 ± 0.0
5.819ValThr: 5.819 ± 0.0
5.505ValVal: 5.505 ± 0.0
1.416ValTrp: 1.416 ± 0.0
1.416ValTyr: 1.416 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.573TrpAla: 1.573 ± 0.0
0.629TrpCys: 0.629 ± 0.0
0.786TrpAsp: 0.786 ± 0.0
0.472TrpGlu: 0.472 ± 0.0
0.786TrpPhe: 0.786 ± 0.0
0.786TrpGly: 0.786 ± 0.0
0.786TrpHis: 0.786 ± 0.0
0.786TrpIle: 0.786 ± 0.0
0.472TrpLys: 0.472 ± 0.0
0.944TrpLeu: 0.944 ± 0.0
0.315TrpMet: 0.315 ± 0.0
1.101TrpAsn: 1.101 ± 0.0
0.944TrpPro: 0.944 ± 0.0
1.258TrpGln: 1.258 ± 0.0
1.258TrpArg: 1.258 ± 0.0
1.258TrpSer: 1.258 ± 0.0
1.258TrpThr: 1.258 ± 0.0
1.258TrpVal: 1.258 ± 0.0
0.157TrpTrp: 0.157 ± 0.0
0.472TrpTyr: 0.472 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.045TyrAla: 2.045 ± 0.0
0.786TyrCys: 0.786 ± 0.0
2.831TyrAsp: 2.831 ± 0.0
1.73TyrGlu: 1.73 ± 0.0
1.258TyrPhe: 1.258 ± 0.0
2.359TyrGly: 2.359 ± 0.0
1.101TyrHis: 1.101 ± 0.0
1.258TyrIle: 1.258 ± 0.0
1.101TyrLys: 1.101 ± 0.0
2.831TyrLeu: 2.831 ± 0.0
1.101TyrMet: 1.101 ± 0.0
1.258TyrAsn: 1.258 ± 0.0
0.944TyrPro: 0.944 ± 0.0
0.944TyrGln: 0.944 ± 0.0
1.416TyrArg: 1.416 ± 0.0
1.887TyrSer: 1.887 ± 0.0
2.988TyrThr: 2.988 ± 0.0
2.045TyrVal: 2.045 ± 0.0
0.157TyrTrp: 0.157 ± 0.0
1.101TyrTyr: 1.101 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (6359 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski