Torque teno midi virus 11

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.28

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7VLZ2|A7VLZ2_9VIRU Capsid protein OS=Torque teno midi virus 11 OX=2065052 PE=3 SV=1
MM1 pKa = 7.43SNYY4 pKa = 9.79SANHH8 pKa = 5.58FFKK11 pKa = 9.81PTPYY15 pKa = 11.19NNDD18 pKa = 3.14TKK20 pKa = 10.99NQMWMSMISDD30 pKa = 3.76GHH32 pKa = 7.87DD33 pKa = 3.38CMCNCPSPFGHH44 pKa = 7.32LLASIFPPGHH54 pKa = 5.66QDD56 pKa = 2.75RR57 pKa = 11.84FLTVEE62 pKa = 4.18EE63 pKa = 4.78IINRR67 pKa = 11.84DD68 pKa = 2.84IKK70 pKa = 10.74EE71 pKa = 4.23CLFGGPDD78 pKa = 3.32ARR80 pKa = 11.84DD81 pKa = 3.54GGEE84 pKa = 3.83AAAGPSTGVDD94 pKa = 3.27TTIKK98 pKa = 10.65RR99 pKa = 11.84EE100 pKa = 4.03DD101 pKa = 3.66PEE103 pKa = 4.24EE104 pKa = 4.81DD105 pKa = 3.17FTKK108 pKa = 10.91EE109 pKa = 3.95NIEE112 pKa = 4.02EE113 pKa = 4.6LIAAAEE119 pKa = 4.24KK120 pKa = 10.61ASEE123 pKa = 4.08RR124 pKa = 3.99

Molecular weight: 13.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7VLZ2|A7VLZ2_9VIRU Capsid protein OS=Torque teno midi virus 11 OX=2065052 PE=3 SV=1
MM1 pKa = 7.31PFWWARR7 pKa = 11.84RR8 pKa = 11.84KK9 pKa = 9.46RR10 pKa = 11.84WWRR13 pKa = 11.84GRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84PFYY20 pKa = 10.23RR21 pKa = 11.84RR22 pKa = 11.84RR23 pKa = 11.84YY24 pKa = 7.77HH25 pKa = 5.21YY26 pKa = 10.11KK27 pKa = 9.06KK28 pKa = 9.73RR29 pKa = 11.84RR30 pKa = 11.84PRR32 pKa = 11.84RR33 pKa = 11.84RR34 pKa = 11.84LYY36 pKa = 10.04KK37 pKa = 9.27RR38 pKa = 11.84KK39 pKa = 9.35HH40 pKa = 5.07RR41 pKa = 11.84RR42 pKa = 11.84TYY44 pKa = 9.27RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84KK49 pKa = 9.42SFRR52 pKa = 11.84KK53 pKa = 8.97VRR55 pKa = 11.84RR56 pKa = 11.84KK57 pKa = 10.05RR58 pKa = 11.84RR59 pKa = 11.84TLPLKK64 pKa = 9.27QWQPEE69 pKa = 4.35TIRR72 pKa = 11.84KK73 pKa = 9.43CKK75 pKa = 10.14VKK77 pKa = 10.79GIGIHH82 pKa = 4.78TLGVEE87 pKa = 4.66GTQYY91 pKa = 11.03RR92 pKa = 11.84CYY94 pKa = 9.66TANKK98 pKa = 9.43YY99 pKa = 10.36EE100 pKa = 4.0YY101 pKa = 9.48TIAKK105 pKa = 8.75QPSGGGFGVEE115 pKa = 4.2RR116 pKa = 11.84YY117 pKa = 7.44TLEE120 pKa = 3.97YY121 pKa = 10.32LYY123 pKa = 10.79KK124 pKa = 10.04EE125 pKa = 4.3HH126 pKa = 7.66KK127 pKa = 10.28AGNNVWTTSNVNLDD141 pKa = 3.41LVRR144 pKa = 11.84YY145 pKa = 6.23TGCRR149 pKa = 11.84FIFWRR154 pKa = 11.84HH155 pKa = 3.98PHH157 pKa = 6.03IDD159 pKa = 3.41FVGVYY164 pKa = 9.66SRR166 pKa = 11.84NYY168 pKa = 9.26PMQLQKK174 pKa = 10.04YY175 pKa = 6.44TYY177 pKa = 9.49PDD179 pKa = 3.22THH181 pKa = 6.77PQQIMLAKK189 pKa = 9.53HH190 pKa = 5.82KK191 pKa = 10.46FFIPSLLTKK200 pKa = 9.7PHH202 pKa = 5.8GKK204 pKa = 9.77RR205 pKa = 11.84YY206 pKa = 10.29VKK208 pKa = 10.36IKK210 pKa = 10.27IKK212 pKa = 10.6PPTQMSNKK220 pKa = 8.79WFFQEE225 pKa = 4.48GFSDD229 pKa = 3.44TGLVQIHH236 pKa = 5.95TAACDD241 pKa = 3.23LRR243 pKa = 11.84YY244 pKa = 10.19AHH246 pKa = 7.32LGCCNTNQLASFLTLNTDD264 pKa = 4.78FYY266 pKa = 11.62QYY268 pKa = 11.27AAWGNPKK275 pKa = 10.07NPYY278 pKa = 9.92IPTEE282 pKa = 3.55QDD284 pKa = 2.06KK285 pKa = 10.0WYY287 pKa = 9.4RR288 pKa = 11.84PYY290 pKa = 10.81RR291 pKa = 11.84IVEE294 pKa = 4.09PVTEE298 pKa = 4.16VEE300 pKa = 4.31DD301 pKa = 3.55VKK303 pKa = 11.4GNKK306 pKa = 8.17KK307 pKa = 9.15TITTVFTPYY316 pKa = 10.51TEE318 pKa = 4.46TITYY322 pKa = 9.28NKK324 pKa = 10.24GWFQPALLQAKK335 pKa = 9.64QITKK339 pKa = 9.82PSQANPPLKK348 pKa = 9.76GARR351 pKa = 11.84YY352 pKa = 9.94NPTLDD357 pKa = 3.27TGEE360 pKa = 4.2NTAVWLTNVVNQSYY374 pKa = 9.61YY375 pKa = 10.04PPKK378 pKa = 9.68TDD380 pKa = 4.76LDD382 pKa = 4.28LFVQGLPLWQLLLGFPDD399 pKa = 3.51WVRR402 pKa = 11.84QKK404 pKa = 11.16KK405 pKa = 9.75KK406 pKa = 10.87DD407 pKa = 3.46PTFLQSYY414 pKa = 6.91YY415 pKa = 11.29LCFHH419 pKa = 7.43CDD421 pKa = 3.49AIEE424 pKa = 4.28PKK426 pKa = 10.19PGLHH430 pKa = 5.58QVFIPVDD437 pKa = 3.4YY438 pKa = 11.31SFVQGKK444 pKa = 9.68GPYY447 pKa = 9.92DD448 pKa = 3.56SLLSKK453 pKa = 9.67WDD455 pKa = 3.43NDD457 pKa = 2.88HH458 pKa = 7.25WYY460 pKa = 7.43PTLKK464 pKa = 10.55HH465 pKa = 5.72QLQTINSVVEE475 pKa = 3.95TGPFVPKK482 pKa = 10.55LDD484 pKa = 3.73TLKK487 pKa = 10.99NSTWEE492 pKa = 4.17LYY494 pKa = 8.96STYY497 pKa = 10.52TFYY500 pKa = 11.19FKK502 pKa = 10.85FGGASLPEE510 pKa = 5.08AEE512 pKa = 4.86TKK514 pKa = 10.87DD515 pKa = 3.49PATQGTHH522 pKa = 5.54EE523 pKa = 4.55VPDD526 pKa = 4.0KK527 pKa = 10.38QSKK530 pKa = 10.09AIQIINPKK538 pKa = 10.05KK539 pKa = 8.47NTAAAALHH547 pKa = 6.22CWDD550 pKa = 4.23FRR552 pKa = 11.84RR553 pKa = 11.84GHH555 pKa = 4.94ITSRR559 pKa = 11.84AFKK562 pKa = 10.37RR563 pKa = 11.84MCEE566 pKa = 3.88NAEE569 pKa = 3.98TDD571 pKa = 3.16SDD573 pKa = 3.98FQADD577 pKa = 3.72VSPKK581 pKa = 8.75KK582 pKa = 9.3TKK584 pKa = 10.01TSLQEE589 pKa = 3.68NTLPCISKK597 pKa = 10.05EE598 pKa = 3.97AEE600 pKa = 3.96EE601 pKa = 4.39VQDD604 pKa = 4.47CLQSLYY610 pKa = 11.03EE611 pKa = 4.15EE612 pKa = 4.37NTFQEE617 pKa = 5.35IPDD620 pKa = 3.66QQNIQQLLHH629 pKa = 5.65QQQQQQQHH637 pKa = 5.24TKK639 pKa = 10.42LQLLQLINNLKK650 pKa = 10.22KK651 pKa = 10.18KK652 pKa = 10.37QKK654 pKa = 10.39LIQLQTGILDD664 pKa = 3.51

Molecular weight: 78.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1321

124

664

330.3

38.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.98 ± 1.204

2.044 ± 0.214

4.466 ± 0.511

6.056 ± 1.244

4.391 ± 0.406

4.769 ± 0.368

3.482 ± 0.355

4.542 ± 0.276

8.554 ± 0.945

6.889 ± 1.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.741 ± 0.679

4.921 ± 0.443

7.419 ± 1.184

5.829 ± 1.283

5.829 ± 0.696

6.435 ± 2.421

7.873 ± 0.423

3.104 ± 0.928

1.665 ± 0.698

4.012 ± 1.137
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski