Capybara microvirus Cap3_SP_315

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W534|A0A4P8W534_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_315 OX=2585425 PE=4 SV=1
MM1 pKa = 7.41SFKK4 pKa = 10.89KK5 pKa = 10.75LIDD8 pKa = 3.7FQLPKK13 pKa = 10.43VDD15 pKa = 4.57DD16 pKa = 4.12PSILVHH22 pKa = 6.7EE23 pKa = 5.65DD24 pKa = 3.01IEE26 pKa = 4.59GTNFSRR32 pKa = 11.84LVEE35 pKa = 4.43KK36 pKa = 9.97PLSSIHH42 pKa = 6.91VDD44 pKa = 3.36LPDD47 pKa = 3.58FRR49 pKa = 11.84LVSLSEE55 pKa = 3.78ILSRR59 pKa = 11.84GEE61 pKa = 4.17DD62 pKa = 3.59LQKK65 pKa = 10.8VDD67 pKa = 3.51TKK69 pKa = 11.07LFEE72 pKa = 5.01SNLPDD77 pKa = 3.79FDD79 pKa = 4.93NDD81 pKa = 2.86IEE83 pKa = 4.67QIVNTYY89 pKa = 9.54EE90 pKa = 3.87SS91 pKa = 3.49

Molecular weight: 10.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8A8|A0A4P8W8A8_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_315 OX=2585425 PE=4 SV=1
MM1 pKa = 7.59CLSPIWIKK9 pKa = 11.12NPTRR13 pKa = 11.84DD14 pKa = 3.52YY15 pKa = 11.37RR16 pKa = 11.84PIDD19 pKa = 3.53KK20 pKa = 10.41VRR22 pKa = 11.84LQIPCGKK29 pKa = 10.03CPQCQQQKK37 pKa = 10.21AKK39 pKa = 10.47DD40 pKa = 3.57YY41 pKa = 8.92EE42 pKa = 4.11FRR44 pKa = 11.84MLSDD48 pKa = 3.97MYY50 pKa = 10.9RR51 pKa = 11.84KK52 pKa = 9.58GRR54 pKa = 11.84SFFFYY59 pKa = 10.34TLTYY63 pKa = 10.59NNQSLPYY70 pKa = 9.67RR71 pKa = 11.84EE72 pKa = 5.23FYY74 pKa = 10.53TLDD77 pKa = 3.69GEE79 pKa = 4.7IKK81 pKa = 10.29HH82 pKa = 5.77YY83 pKa = 9.33MCFVKK88 pKa = 10.61DD89 pKa = 3.83HH90 pKa = 6.95IKK92 pKa = 8.46THH94 pKa = 6.08INNIRR99 pKa = 11.84KK100 pKa = 8.96YY101 pKa = 8.24LHH103 pKa = 6.03KK104 pKa = 10.14HH105 pKa = 5.6FSFKK109 pKa = 10.66GCSFFCVPEE118 pKa = 3.96YY119 pKa = 11.36GDD121 pKa = 3.46LKK123 pKa = 11.07KK124 pKa = 10.27RR125 pKa = 11.84VHH127 pKa = 4.12WHH129 pKa = 6.01VYY131 pKa = 9.27FSTPVKK137 pKa = 10.3FDD139 pKa = 3.06AKK141 pKa = 10.59KK142 pKa = 10.2FLEE145 pKa = 4.11IVNRR149 pKa = 11.84FWNYY153 pKa = 9.19GLVFPEE159 pKa = 3.55HH160 pKa = 6.71HH161 pKa = 6.55YY162 pKa = 10.91SYY164 pKa = 9.84KK165 pKa = 6.95TTRR168 pKa = 11.84NRR170 pKa = 11.84LCRR173 pKa = 11.84GIEE176 pKa = 3.76IKK178 pKa = 10.93NPEE181 pKa = 3.89TSSYY185 pKa = 10.76YY186 pKa = 8.56IAHH189 pKa = 6.32YY190 pKa = 9.41VTDD193 pKa = 4.16FSIIRR198 pKa = 11.84DD199 pKa = 3.4IPHH202 pKa = 5.67VDD204 pKa = 2.86KK205 pKa = 11.33YY206 pKa = 11.81LNGLLLDD213 pKa = 4.73NDD215 pKa = 4.24TKK217 pKa = 11.29SYY219 pKa = 8.34TLRR222 pKa = 11.84PFVFMSKK229 pKa = 10.32SLGDD233 pKa = 3.64NEE235 pKa = 4.73EE236 pKa = 4.06LRR238 pKa = 11.84KK239 pKa = 10.71DD240 pKa = 3.4PDD242 pKa = 3.39KK243 pKa = 11.19LISYY247 pKa = 7.55FKK249 pKa = 10.52NGYY252 pKa = 6.82ITPFGKK258 pKa = 10.44KK259 pKa = 9.67LRR261 pKa = 11.84VPLFIIRR268 pKa = 11.84KK269 pKa = 5.85TLFDD273 pKa = 4.98IEE275 pKa = 4.44YY276 pKa = 9.66KK277 pKa = 11.02DD278 pKa = 4.43NGRR281 pKa = 11.84KK282 pKa = 9.7DD283 pKa = 3.75KK284 pKa = 11.26NNKK287 pKa = 8.91PSLDD291 pKa = 3.56VIYY294 pKa = 10.46KK295 pKa = 10.44LNSLGFKK302 pKa = 10.05FYY304 pKa = 11.08HH305 pKa = 6.08EE306 pKa = 4.67NFGNMIKK313 pKa = 10.3QKK315 pKa = 10.72AEE317 pKa = 3.77KK318 pKa = 9.21LAHH321 pKa = 6.82GFRR324 pKa = 11.84CMKK327 pKa = 10.32ALRR330 pKa = 11.84PQFFNIIEE338 pKa = 4.26KK339 pKa = 10.66KK340 pKa = 10.23FDD342 pKa = 3.37GSFEE346 pKa = 4.62DD347 pKa = 3.95KK348 pKa = 11.13LCINFFNDD356 pKa = 2.96KK357 pKa = 10.94QIFTKK362 pKa = 10.54FALYY366 pKa = 7.68DD367 pKa = 3.31TCFRR371 pKa = 11.84DD372 pKa = 3.75VKK374 pKa = 10.64SQNFMFGVPQSVKK387 pKa = 10.68DD388 pKa = 3.67LFRR391 pKa = 11.84ISPDD395 pKa = 2.5IYY397 pKa = 10.62LQRR400 pKa = 11.84KK401 pKa = 7.6LQYY404 pKa = 9.9KK405 pKa = 9.01PLIGKK410 pKa = 8.92SSPKK414 pKa = 9.94YY415 pKa = 9.67DD416 pKa = 3.5VKK418 pKa = 10.82EE419 pKa = 4.04TFSNYY424 pKa = 9.82RR425 pKa = 11.84EE426 pKa = 4.0FVFWDD431 pKa = 3.42YY432 pKa = 11.43CIDD435 pKa = 3.84SFNSCSARR443 pKa = 11.84TYY445 pKa = 10.58SRR447 pKa = 11.84SVFNLLEE454 pKa = 4.15FDD456 pKa = 4.34KK457 pKa = 10.97KK458 pKa = 11.17SQILDD463 pKa = 3.51LNYY466 pKa = 10.07VFF468 pKa = 5.92

Molecular weight: 56.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1784

68

659

297.3

34.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.372 ± 2.094

1.794 ± 0.463

6.67 ± 0.728

4.092 ± 0.528

6.502 ± 1.54

4.372 ± 0.723

2.074 ± 0.542

6.839 ± 0.546

7.287 ± 1.517

10.258 ± 1.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.289 ± 0.262

7.231 ± 0.959

3.98 ± 0.394

4.204 ± 0.701

4.092 ± 0.56

8.352 ± 0.65

6.11 ± 1.242

4.652 ± 0.327

0.841 ± 0.22

4.989 ± 0.954
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski