Corchorus capsularis (Jute)

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Grewioideae; Apeibeae; Corchorus

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 29098 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1R3HFU7|A0A1R3HFU7_COCAP J domain-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_19623 PE=3 SV=1
MM1 pKa = 8.28DD2 pKa = 6.74DD3 pKa = 5.04YY4 pKa = 11.68LDD6 pKa = 3.43QCFTSSSWSDD16 pKa = 3.19MNVKK20 pKa = 9.42EE21 pKa = 4.04RR22 pKa = 11.84SSWVHH27 pKa = 6.07SEE29 pKa = 4.82PDD31 pKa = 3.7DD32 pKa = 4.48QPDD35 pKa = 3.53ALLSAGSLGVYY46 pKa = 9.74NQDD49 pKa = 3.62DD50 pKa = 4.45NKK52 pKa = 10.72NSSPVRR58 pKa = 11.84MLGSDD63 pKa = 3.38HH64 pKa = 6.35GTIGCLPEE72 pKa = 4.42QDD74 pKa = 4.27ISPSLAPSAEE84 pKa = 4.27SGCGVDD90 pKa = 5.15HH91 pKa = 7.08SLLPGEE97 pKa = 5.11GDD99 pKa = 3.76GQICSGNSS107 pKa = 2.92

Molecular weight: 11.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1R3IRN9|A0A1R3IRN9_COCAP Glutamine amidotransferase type 1 OS=Corchorus capsularis OX=210143 GN=CCACVL1_10306 PE=4 SV=1
MM1 pKa = 7.1RR2 pKa = 11.84AKK4 pKa = 9.27WKK6 pKa = 9.53KK7 pKa = 9.88KK8 pKa = 8.64RR9 pKa = 11.84MRR11 pKa = 11.84RR12 pKa = 11.84LKK14 pKa = 10.08RR15 pKa = 11.84KK16 pKa = 8.21RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 8.46MRR21 pKa = 11.84QRR23 pKa = 11.84SKK25 pKa = 11.41

Molecular weight: 3.43 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

29098

0

29098

10081701

19

5351

346.5

38.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.829 ± 0.015

1.807 ± 0.007

5.357 ± 0.012

6.626 ± 0.017

4.196 ± 0.009

6.448 ± 0.017

2.313 ± 0.006

5.316 ± 0.01

6.362 ± 0.014

9.582 ± 0.018

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.435 ± 0.007

4.56 ± 0.012

4.998 ± 0.014

3.774 ± 0.01

5.272 ± 0.012

8.857 ± 0.019

4.805 ± 0.01

6.42 ± 0.011

1.286 ± 0.006

2.757 ± 0.008
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski