Trebonia kvetii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Streptosporangiales; Treboniaceae; Trebonia

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8100 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6P2C751|A0A6P2C751_9ACTN Flavin reductase OS=Trebonia kvetii OX=2480626 GN=EAS64_06870 PE=4 SV=1
MM1 pKa = 7.01PTATAGTTGATAAGVRR17 pKa = 11.84GTPSPPPGFTTVFADD32 pKa = 4.92DD33 pKa = 4.01FNGPAGSAPSQQNWFYY49 pKa = 11.69DD50 pKa = 3.21LGTTFGSDD58 pKa = 3.39QVNQTNSTSNTYY70 pKa = 10.97LDD72 pKa = 3.8GKK74 pKa = 10.65GDD76 pKa = 4.39LVMQANDD83 pKa = 3.54TGGKK87 pKa = 5.09WTAAEE92 pKa = 4.15IEE94 pKa = 4.26TTRR97 pKa = 11.84DD98 pKa = 3.12DD99 pKa = 3.91FAAPPGGKK107 pKa = 9.72LEE109 pKa = 3.96ITASIEE115 pKa = 4.1QPNPANGTGYY125 pKa = 9.86WPAFWAGGTPIRR137 pKa = 11.84NGGPWPQSGEE147 pKa = 3.56IDD149 pKa = 3.39MMEE152 pKa = 5.58DD153 pKa = 3.03INGLNEE159 pKa = 3.91AAQTFHH165 pKa = 7.03FGSSSSTQLGGEE177 pKa = 4.47LMSCPDD183 pKa = 3.97KK184 pKa = 11.4ASTCQTGFHH193 pKa = 6.61TYY195 pKa = 10.38SVIIDD200 pKa = 3.61RR201 pKa = 11.84TNTSDD206 pKa = 3.9EE207 pKa = 4.19SLQFLMDD214 pKa = 3.34GRR216 pKa = 11.84IEE218 pKa = 4.01ATYY221 pKa = 10.54TEE223 pKa = 4.45AQVGTSTWQAAIDD236 pKa = 3.61HH237 pKa = 7.12DD238 pKa = 4.81FFILLDD244 pKa = 3.81VVLGGTWPDD253 pKa = 3.56NQCGCTSPTSATTPGGAMRR272 pKa = 11.84VGCVAVYY279 pKa = 10.43EE280 pKa = 4.39EE281 pKa = 4.51AANN284 pKa = 3.54

Molecular weight: 29.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6P2BRK4|A0A6P2BRK4_9ACTN ABC transporter permease OS=Trebonia kvetii OX=2480626 GN=EAS64_34075 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.99KK16 pKa = 9.77HH17 pKa = 5.81RR18 pKa = 11.84KK19 pKa = 8.55LLKK22 pKa = 8.44KK23 pKa = 9.17TRR25 pKa = 11.84IQRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.73KK32 pKa = 9.84

Molecular weight: 4.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8100

0

8100

2589830

25

2662

319.7

34.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.406 ± 0.041

0.839 ± 0.009

5.544 ± 0.023

4.916 ± 0.023

2.922 ± 0.016

9.587 ± 0.029

2.075 ± 0.012

3.951 ± 0.018

1.932 ± 0.017

10.035 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.867 ± 0.011

1.983 ± 0.015

6.052 ± 0.025

2.991 ± 0.017

7.543 ± 0.027

5.584 ± 0.025

5.895 ± 0.025

8.084 ± 0.022

1.593 ± 0.011

2.202 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski