Bovine papillomavirus type 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Xipapillomavirus

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q8BDD9|VE8_BPV3 Uncharacterized protein E8 OS=Bovine papillomavirus type 3 OX=10561 PE=4 SV=1
MM1 pKa = 7.65KK2 pKa = 10.5GQDD5 pKa = 3.29VTLKK9 pKa = 10.25NVAVEE14 pKa = 4.32LEE16 pKa = 4.55DD17 pKa = 3.53VVSPIILDD25 pKa = 3.6CEE27 pKa = 4.23EE28 pKa = 4.55EE29 pKa = 4.3IEE31 pKa = 4.34TEE33 pKa = 4.32EE34 pKa = 4.23VDD36 pKa = 4.38CPAPYY41 pKa = 10.19AVEE44 pKa = 3.99AVCYY48 pKa = 10.17VCEE51 pKa = 4.06NPLRR55 pKa = 11.84LALVSSPDD63 pKa = 4.26GIHH66 pKa = 6.42QLHH69 pKa = 6.18QLLLDD74 pKa = 5.13CISLLCANCSRR85 pKa = 11.84EE86 pKa = 4.24VYY88 pKa = 10.38SNRR91 pKa = 11.84RR92 pKa = 11.84PQRR95 pKa = 11.84NGPP98 pKa = 3.53

Molecular weight: 10.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P50805|VL1_BPV3 Major capsid protein L1 OS=Bovine papillomavirus type 3 OX=10561 GN=L1 PE=3 SV=2
MM1 pKa = 7.75KK2 pKa = 10.3IFLQSSLPPGPNRR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84GPQTRR22 pKa = 11.84GHH24 pKa = 6.77PRR26 pKa = 11.84HH27 pKa = 6.31KK28 pKa = 9.91SASFRR33 pKa = 11.84RR34 pKa = 11.84SASSGSDD41 pKa = 2.93TRR43 pKa = 11.84DD44 pKa = 2.83SRR46 pKa = 11.84GRR48 pKa = 11.84SRR50 pKa = 11.84SPSSSRR56 pKa = 11.84SRR58 pKa = 11.84SRR60 pKa = 11.84SRR62 pKa = 11.84SRR64 pKa = 11.84SPSGSHH70 pKa = 5.28SRR72 pKa = 11.84PRR74 pKa = 11.84APHH77 pKa = 6.3VPDD80 pKa = 3.61QEE82 pKa = 4.39TGRR85 pKa = 11.84PPGGGGRR92 pKa = 11.84RR93 pKa = 11.84GSRR96 pKa = 11.84DD97 pKa = 3.34QQQGPGGPAPPSPGEE112 pKa = 3.82VGTRR116 pKa = 11.84SGPPEE121 pKa = 3.93TKK123 pKa = 10.48AKK125 pKa = 10.29GRR127 pKa = 11.84LAEE130 pKa = 5.13LISAAYY136 pKa = 9.2DD137 pKa = 3.6PPVLLLQGCANTLKK151 pKa = 10.42SFRR154 pKa = 11.84RR155 pKa = 11.84RR156 pKa = 11.84TTQSYY161 pKa = 8.82PHH163 pKa = 6.91TFLCMSTSWTWASKK177 pKa = 8.6TCTVKK182 pKa = 10.42SGHH185 pKa = 6.15RR186 pKa = 11.84MLVAFVNSEE195 pKa = 3.58QRR197 pKa = 11.84TLFLATVKK205 pKa = 10.11IPKK208 pKa = 10.11GVTCLKK214 pKa = 10.76GSFDD218 pKa = 3.85GLL220 pKa = 3.73

Molecular weight: 23.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

2682

75

613

298.0

33.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.078 ± 0.535

1.827 ± 0.468

5.928 ± 0.447

5.817 ± 0.694

4.325 ± 0.501

6.861 ± 0.844

2.461 ± 0.207

4.623 ± 0.641

4.512 ± 0.586

9.098 ± 1.135

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.752 ± 0.31

4.027 ± 0.785

7.159 ± 0.935

4.101 ± 0.555

7.047 ± 0.913

8.427 ± 0.9

6.376 ± 0.812

5.406 ± 0.797

1.454 ± 0.261

2.722 ± 0.36
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski