Termite associated circular virus 4

Taxonomy: Viruses; unclassified viruses; unclassified DNA viruses; unclassified ssDNA viruses

Average proteome isoelectric point is 7.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1E315|A0A2P1E315_9VIRU Replication associated protein OS=Termite associated circular virus 4 OX=2108552 PE=3 SV=1
MM1 pKa = 8.14PEE3 pKa = 3.93FRR5 pKa = 11.84WQGKK9 pKa = 7.58YY10 pKa = 10.71LFLTYY15 pKa = 9.76PQSDD19 pKa = 4.02FNLDD23 pKa = 3.63GAVHH27 pKa = 7.3RR28 pKa = 11.84LRR30 pKa = 11.84EE31 pKa = 3.83QGGRR35 pKa = 11.84HH36 pKa = 3.73VTFVRR41 pKa = 11.84VCSEE45 pKa = 3.61QHH47 pKa = 5.52QSGEE51 pKa = 4.16LHH53 pKa = 6.13RR54 pKa = 11.84HH55 pKa = 5.41ALLCFGKK62 pKa = 10.23RR63 pKa = 11.84VSFTDD68 pKa = 3.07QRR70 pKa = 11.84RR71 pKa = 11.84FDD73 pKa = 3.28IDD75 pKa = 2.99GRR77 pKa = 11.84HH78 pKa = 6.06PKK80 pKa = 8.67WEE82 pKa = 4.16RR83 pKa = 11.84YY84 pKa = 6.57TRR86 pKa = 11.84SPAKK90 pKa = 9.72AAEE93 pKa = 4.28YY94 pKa = 9.38IAKK97 pKa = 10.08EE98 pKa = 4.1GEE100 pKa = 4.17YY101 pKa = 10.33VDD103 pKa = 3.76WGEE106 pKa = 4.31TPDD109 pKa = 4.94FSTPEE114 pKa = 3.91CRR116 pKa = 11.84EE117 pKa = 3.84SRR119 pKa = 11.84NEE121 pKa = 3.46LWGRR125 pKa = 11.84LLDD128 pKa = 3.93EE129 pKa = 4.53ATTPEE134 pKa = 4.2SFMSLVRR141 pKa = 11.84QFAPYY146 pKa = 10.76DD147 pKa = 3.2FATRR151 pKa = 11.84YY152 pKa = 8.74QALHH156 pKa = 5.69TMATSVFHH164 pKa = 6.81RR165 pKa = 11.84RR166 pKa = 11.84SPHH169 pKa = 5.15QSPHH173 pKa = 7.56DD174 pKa = 3.77MVEE177 pKa = 4.2DD178 pKa = 4.19FQLPDD183 pKa = 3.61TIEE186 pKa = 3.72RR187 pKa = 11.84WLEE190 pKa = 3.79EE191 pKa = 4.14EE192 pKa = 4.16FDD194 pKa = 3.66QEE196 pKa = 4.18NRR198 pKa = 11.84PIRR201 pKa = 11.84PKK203 pKa = 10.75SLLIVGDD210 pKa = 3.75SRR212 pKa = 11.84SGKK215 pKa = 8.7TSFARR220 pKa = 11.84CLGHH224 pKa = 7.21HH225 pKa = 7.15IYY227 pKa = 10.44FQGLFNLDD235 pKa = 3.58KK236 pKa = 10.7FDD238 pKa = 4.16PQADD242 pKa = 3.72YY243 pKa = 11.54AVFDD247 pKa = 3.85DD248 pKa = 6.37CKK250 pKa = 10.72IKK252 pKa = 10.14WISNHH257 pKa = 6.18KK258 pKa = 9.94SWLGCGGEE266 pKa = 4.7FEE268 pKa = 4.99ATDD271 pKa = 3.3KK272 pKa = 11.32YY273 pKa = 9.54RR274 pKa = 11.84TKK276 pKa = 10.36RR277 pKa = 11.84TLSWSGKK284 pKa = 9.53PSIICCNRR292 pKa = 11.84GSTWDD297 pKa = 3.2WRR299 pKa = 11.84YY300 pKa = 10.53SEE302 pKa = 4.54EE303 pKa = 4.3WKK305 pKa = 10.66DD306 pKa = 3.55DD307 pKa = 4.15PGWFEE312 pKa = 4.81ANVVVCEE319 pKa = 4.72LGPNQQLWEE328 pKa = 4.28VPNN331 pKa = 3.99

Molecular weight: 38.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1E315|A0A2P1E315_9VIRU Replication associated protein OS=Termite associated circular virus 4 OX=2108552 PE=3 SV=1
MM1 pKa = 6.87PQRR4 pKa = 11.84RR5 pKa = 11.84ARR7 pKa = 11.84TRR9 pKa = 11.84RR10 pKa = 11.84TARR13 pKa = 11.84KK14 pKa = 8.77GRR16 pKa = 11.84KK17 pKa = 7.9STTTRR22 pKa = 11.84RR23 pKa = 11.84KK24 pKa = 8.72QPLVKK29 pKa = 10.42VMRR32 pKa = 11.84RR33 pKa = 11.84VARR36 pKa = 11.84QQINRR41 pKa = 11.84AVEE44 pKa = 4.19TKK46 pKa = 10.13RR47 pKa = 11.84FAIINEE53 pKa = 4.31SWSSTFIDD61 pKa = 4.24FATRR65 pKa = 11.84NTTWKK70 pKa = 10.08YY71 pKa = 11.28KK72 pKa = 10.85NLFSQLGTGNTSWSIVGNEE91 pKa = 4.17ILNPMVKK98 pKa = 9.43IKK100 pKa = 10.69GRR102 pKa = 11.84IWVDD106 pKa = 2.79WNANRR111 pKa = 11.84QINTVVGPQDD121 pKa = 3.52VQVTVYY127 pKa = 10.4LIAANEE133 pKa = 4.07QLSTTAPSPLLASSDD148 pKa = 3.43YY149 pKa = 10.74WFYY152 pKa = 11.36QPDD155 pKa = 3.99GQNPTLNGNNVKK167 pKa = 10.42VLGRR171 pKa = 11.84TSKK174 pKa = 10.52KK175 pKa = 10.06IKK177 pKa = 10.09AQLPIAAATTSTFSGTSTTRR197 pKa = 11.84FQMSYY202 pKa = 7.46RR203 pKa = 11.84WKK205 pKa = 10.64RR206 pKa = 11.84KK207 pKa = 7.73LTYY210 pKa = 9.94EE211 pKa = 4.21DD212 pKa = 4.09VVGNPPSVGGPTRR225 pKa = 11.84DD226 pKa = 3.04VYY228 pKa = 11.34LRR230 pKa = 11.84GWNYY234 pKa = 9.52YY235 pKa = 9.59VLLGVHH241 pKa = 6.35VPQTHH246 pKa = 6.16NGSLVGTSTNVSMDD260 pKa = 2.59TFMYY264 pKa = 10.82YY265 pKa = 10.34KK266 pKa = 10.69DD267 pKa = 3.5PP268 pKa = 4.35

Molecular weight: 30.45 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

599

268

331

299.5

34.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.175 ± 0.273

1.503 ± 0.973

5.342 ± 1.285

5.342 ± 2.251

4.841 ± 1.202

6.344 ± 0.0

2.504 ± 1.138

3.673 ± 0.521

5.175 ± 0.515

6.511 ± 0.35

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.669 ± 0.369

4.674 ± 1.564

5.342 ± 0.077

4.841 ± 0.248

8.514 ± 0.044

7.179 ± 0.184

7.846 ± 2.167

6.344 ± 1.449

3.506 ± 0.337

3.673 ± 0.279
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski