Capybara microvirus Cap1_SP_87

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W529|A0A4P8W529_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_87 OX=2584796 PE=3 SV=1
MM1 pKa = 7.54KK2 pKa = 9.58VTKK5 pKa = 10.23LLYY8 pKa = 10.56LEE10 pKa = 4.3NPRR13 pKa = 11.84YY14 pKa = 9.56ASPIIPDD21 pKa = 3.12QVMEE25 pKa = 4.46KK26 pKa = 10.44EE27 pKa = 4.1YY28 pKa = 10.93TEE30 pKa = 4.88DD31 pKa = 3.81GNVVQVWKK39 pKa = 10.83VKK41 pKa = 10.81SNYY44 pKa = 9.28EE45 pKa = 4.05DD46 pKa = 5.33LIEE49 pKa = 4.57LHH51 pKa = 7.01GDD53 pKa = 3.33ANNWSIDD60 pKa = 3.43ALMKK64 pKa = 10.8AGIDD68 pKa = 3.62PASTSINTGKK78 pKa = 10.27NSRR81 pKa = 11.84LDD83 pKa = 3.67GYY85 pKa = 11.49NDD87 pKa = 3.46LGKK90 pKa = 10.62FIDD93 pKa = 4.3GFEE96 pKa = 4.1VLTDD100 pKa = 3.93EE101 pKa = 6.04GDD103 pKa = 3.25IDD105 pKa = 4.26NNN107 pKa = 3.74

Molecular weight: 12.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7M9|A0A4P8W7M9_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_87 OX=2584796 PE=4 SV=1
MM1 pKa = 7.51FKK3 pKa = 10.0TLTVKK8 pKa = 9.25NTTHH12 pKa = 6.29YY13 pKa = 11.32VDD15 pKa = 4.36LSRR18 pKa = 11.84SKK20 pKa = 10.19ICNSFRR26 pKa = 11.84NPSAFQSEE34 pKa = 4.32EE35 pKa = 4.19LKK37 pKa = 10.34RR38 pKa = 11.84QSYY41 pKa = 7.25EE42 pKa = 3.28ARR44 pKa = 11.84LYY46 pKa = 10.96YY47 pKa = 10.25EE48 pKa = 4.72YY49 pKa = 11.0LDD51 pKa = 3.85CQRR54 pKa = 11.84RR55 pKa = 11.84KK56 pKa = 10.54CPVFFYY62 pKa = 10.7TLTFNNMHH70 pKa = 6.64LPHH73 pKa = 7.3YY74 pKa = 8.51EE75 pKa = 3.75GHH77 pKa = 5.8VCFDD81 pKa = 4.08NKK83 pKa = 10.57ILMQFMNSLRR93 pKa = 11.84KK94 pKa = 9.62RR95 pKa = 11.84LVRR98 pKa = 11.84DD99 pKa = 3.17YY100 pKa = 11.41GCNFKK105 pKa = 11.2YY106 pKa = 10.17FVSCEE111 pKa = 3.94MGEE114 pKa = 4.33GAGTRR119 pKa = 11.84KK120 pKa = 9.85EE121 pKa = 4.22YY122 pKa = 10.78EE123 pKa = 3.87NPHH126 pKa = 4.88YY127 pKa = 10.44HH128 pKa = 6.38VLFFTYY134 pKa = 10.43AEE136 pKa = 4.36PDD138 pKa = 3.33HH139 pKa = 6.72YY140 pKa = 10.46FVRR143 pKa = 11.84PTVYY147 pKa = 10.4DD148 pKa = 3.98FKK150 pKa = 11.48KK151 pKa = 10.35LVRR154 pKa = 11.84LYY156 pKa = 10.62WMGQEE161 pKa = 3.64KK162 pKa = 10.43VGYY165 pKa = 9.73INYY168 pKa = 7.73KK169 pKa = 5.18TAKK172 pKa = 9.64YY173 pKa = 8.76GISMEE178 pKa = 4.23GDD180 pKa = 2.98HH181 pKa = 7.07CGLVLNFNACTYY193 pKa = 8.1VAKK196 pKa = 10.28YY197 pKa = 9.37VCKK200 pKa = 10.14DD201 pKa = 3.05TTKK204 pKa = 9.96WKK206 pKa = 10.59NIEE209 pKa = 4.16STNLSDD215 pKa = 4.41RR216 pKa = 11.84LYY218 pKa = 11.34SLVDD222 pKa = 3.45DD223 pKa = 4.5EE224 pKa = 5.25QNSKK228 pKa = 11.13EE229 pKa = 3.93NMVEE233 pKa = 4.09FFKK236 pKa = 11.45SEE238 pKa = 4.12FNPLLEE244 pKa = 4.68GKK246 pKa = 9.75SPQEE250 pKa = 3.74WYY252 pKa = 10.39DD253 pKa = 3.59EE254 pKa = 4.4YY255 pKa = 11.12IEE257 pKa = 4.56FLDD260 pKa = 4.9TIPFTYY266 pKa = 10.52DD267 pKa = 3.48DD268 pKa = 5.33LDD270 pKa = 5.4SEE272 pKa = 5.25DD273 pKa = 5.75DD274 pKa = 4.13YY275 pKa = 12.1DD276 pKa = 5.31DD277 pKa = 4.03EE278 pKa = 4.59EE279 pKa = 4.75NYY281 pKa = 10.23RR282 pKa = 11.84EE283 pKa = 4.08YY284 pKa = 11.29LDD286 pKa = 4.4KK287 pKa = 10.79KK288 pKa = 9.53AKK290 pKa = 9.84KK291 pKa = 9.81RR292 pKa = 11.84VILDD296 pKa = 3.52HH297 pKa = 5.82IKK299 pKa = 10.34KK300 pKa = 10.42YY301 pKa = 10.39KK302 pKa = 10.21RR303 pKa = 11.84CDD305 pKa = 4.26DD306 pKa = 3.85ILSHH310 pKa = 7.29LDD312 pKa = 3.51VIEE315 pKa = 4.61TILYY319 pKa = 9.94DD320 pKa = 3.72FNLYY324 pKa = 10.76DD325 pKa = 3.36NEE327 pKa = 4.47YY328 pKa = 11.21YY329 pKa = 10.87SFCCYY334 pKa = 10.61LSDD337 pKa = 5.54DD338 pKa = 4.4KK339 pKa = 11.81VSEE342 pKa = 4.04QKK344 pKa = 10.58KK345 pKa = 8.14EE346 pKa = 3.79FRR348 pKa = 11.84SRR350 pKa = 11.84YY351 pKa = 7.62CPKK354 pKa = 10.54VMISQGVGKK363 pKa = 10.43YY364 pKa = 10.37ALDD367 pKa = 5.16FINPDD372 pKa = 2.91HH373 pKa = 7.35PYY375 pKa = 10.96VVIQTTKK382 pKa = 9.81GPQSRR387 pKa = 11.84PVSLYY392 pKa = 8.54YY393 pKa = 10.22YY394 pKa = 10.34RR395 pKa = 11.84KK396 pKa = 9.79IYY398 pKa = 10.52CDD400 pKa = 3.28TLKK403 pKa = 10.91DD404 pKa = 3.58EE405 pKa = 4.98KK406 pKa = 10.99GQNIYY411 pKa = 10.61VLNSRR416 pKa = 11.84GIDD419 pKa = 3.08MRR421 pKa = 11.84MRR423 pKa = 11.84NLSKK427 pKa = 10.66EE428 pKa = 4.06LTKK431 pKa = 11.13LIDD434 pKa = 3.56DD435 pKa = 3.88TRR437 pKa = 11.84KK438 pKa = 10.16VIQLFRR444 pKa = 11.84DD445 pKa = 3.56DD446 pKa = 3.65SYY448 pKa = 11.84KK449 pKa = 11.04AEE451 pKa = 4.56FYY453 pKa = 11.22ANQRR457 pKa = 11.84EE458 pKa = 4.66YY459 pKa = 11.34LFHH462 pKa = 7.58PLNKK466 pKa = 10.06YY467 pKa = 7.57NTSLGDD473 pKa = 3.0IWNDD477 pKa = 2.72IHH479 pKa = 9.14SDD481 pKa = 3.21EE482 pKa = 5.36DD483 pKa = 4.81FDD485 pKa = 4.12MKK487 pKa = 11.13LNNIEE492 pKa = 4.15NKK494 pKa = 10.42LYY496 pKa = 10.69DD497 pKa = 3.43YY498 pKa = 11.05AIYY501 pKa = 10.46KK502 pKa = 9.88KK503 pKa = 9.61IYY505 pKa = 7.31EE506 pKa = 4.12WRR508 pKa = 11.84SYY510 pKa = 10.32RR511 pKa = 11.84QDD513 pKa = 3.25GDD515 pKa = 4.07SVSVIDD521 pKa = 4.41PEE523 pKa = 4.08YY524 pKa = 10.83DD525 pKa = 3.49YY526 pKa = 11.86SCFLHH531 pKa = 7.1SPALDD536 pKa = 3.47CSYY539 pKa = 10.92LPNGFDD545 pKa = 5.46DD546 pKa = 4.5ISDD549 pKa = 4.16SEE551 pKa = 4.31TSKK554 pKa = 11.34YY555 pKa = 11.01NLYY558 pKa = 10.27CDD560 pKa = 3.7HH561 pKa = 7.49PRR563 pKa = 11.84FKK565 pKa = 11.16CNIGLFTLLDD575 pKa = 3.82CMVDD579 pKa = 3.34YY580 pKa = 11.37AFWQKK585 pKa = 11.33DD586 pKa = 2.97KK587 pKa = 11.32AKK589 pKa = 9.91RR590 pKa = 11.84RR591 pKa = 11.84RR592 pKa = 11.84YY593 pKa = 8.17EE594 pKa = 3.52EE595 pKa = 3.8RR596 pKa = 11.84NKK598 pKa = 9.71VRR600 pKa = 11.84KK601 pKa = 7.8QQIVEE606 pKa = 4.32KK607 pKa = 10.54ISTFFNN613 pKa = 3.59

Molecular weight: 73.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1669

107

613

417.3

47.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.531 ± 2.0

1.558 ± 0.669

7.849 ± 0.824

5.632 ± 0.952

4.913 ± 0.638

5.692 ± 1.04

1.558 ± 0.529

5.153 ± 0.22

6.89 ± 0.992

7.789 ± 0.365

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.397 ± 0.167

5.932 ± 0.418

2.876 ± 0.378

4.374 ± 1.049

4.374 ± 0.542

8.089 ± 0.862

5.812 ± 0.806

5.153 ± 0.448

1.198 ± 0.116

6.231 ± 1.397
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski