Actinomyces sp. oral taxon 175 str. F0384

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Actinomycetales; Actinomycetaceae; Actinomyces; unclassified Actinomyces; Actinomyces sp. oral taxon 175

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2638 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F9PJC1|F9PJC1_9ACTO Transporter major facilitator family protein OS=Actinomyces sp. oral taxon 175 str. F0384 OX=944560 GN=HMPREF9058_2037 PE=4 SV=1
MM1 pKa = 7.03AQSVHH6 pKa = 4.66AHH8 pKa = 5.54LRR10 pKa = 11.84YY11 pKa = 10.48SIDD14 pKa = 3.82HH15 pKa = 6.5EE16 pKa = 4.19WLEE19 pKa = 4.7DD20 pKa = 3.84GEE22 pKa = 4.41PACVGITTVAADD34 pKa = 3.59ALGEE38 pKa = 4.37VVFVDD43 pKa = 4.61LPEE46 pKa = 4.76VGAQVEE52 pKa = 4.19AGEE55 pKa = 4.32PCGEE59 pKa = 4.13LEE61 pKa = 4.31STKK64 pKa = 10.66SVSDD68 pKa = 3.46LVSPVSGTVVAVNDD82 pKa = 3.99AVVDD86 pKa = 4.12EE87 pKa = 5.22PGTINEE93 pKa = 4.54DD94 pKa = 3.58PYY96 pKa = 10.65GAGWLFTVTVSAEE109 pKa = 3.89GDD111 pKa = 3.57LLSAQDD117 pKa = 3.83YY118 pKa = 10.85ADD120 pKa = 4.14KK121 pKa = 10.84FDD123 pKa = 4.24AVVDD127 pKa = 4.13GG128 pKa = 4.64

Molecular weight: 13.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F9PGZ8|F9PGZ8_9ACTO FeS assembly protein SufD OS=Actinomyces sp. oral taxon 175 str. F0384 OX=944560 GN=sufD PE=3 SV=1
MM1 pKa = 8.02PEE3 pKa = 3.85TTFACPDD10 pKa = 3.17LTTFLGLDD18 pKa = 3.6ALGLTAVGQLLTSTRR33 pKa = 11.84AIVEE37 pKa = 3.89CRR39 pKa = 11.84MPIGFEE45 pKa = 4.53DD46 pKa = 4.54PFCRR50 pKa = 11.84ACGAQGVSRR59 pKa = 11.84GTVARR64 pKa = 11.84RR65 pKa = 11.84LAHH68 pKa = 6.45VPVGWRR74 pKa = 11.84PTQLVVRR81 pKa = 11.84VRR83 pKa = 11.84RR84 pKa = 11.84FACTHH89 pKa = 5.79CRR91 pKa = 11.84RR92 pKa = 11.84VWRR95 pKa = 11.84QDD97 pKa = 2.98TSGLAEE103 pKa = 3.78PRR105 pKa = 11.84ARR107 pKa = 11.84LTRR110 pKa = 11.84SAVEE114 pKa = 3.43WGLRR118 pKa = 11.84SLALEE123 pKa = 4.3CMSVSRR129 pKa = 11.84VAAALGISWHH139 pKa = 5.43TANNAILTRR148 pKa = 11.84AEE150 pKa = 4.13QILNEE155 pKa = 4.21APDD158 pKa = 3.4RR159 pKa = 11.84FKK161 pKa = 11.13GVEE164 pKa = 3.7ALGVDD169 pKa = 3.49EE170 pKa = 5.09HH171 pKa = 6.13VWRR174 pKa = 11.84HH175 pKa = 4.17TRR177 pKa = 11.84RR178 pKa = 11.84GDD180 pKa = 3.35RR181 pKa = 11.84YY182 pKa = 7.78VTVMIDD188 pKa = 3.35LTPVRR193 pKa = 11.84DD194 pKa = 3.45RR195 pKa = 11.84SGPARR200 pKa = 11.84LLDD203 pKa = 3.8VVPGRR208 pKa = 11.84SKK210 pKa = 10.88KK211 pKa = 9.31VLKK214 pKa = 9.35TWLSQRR220 pKa = 11.84DD221 pKa = 3.69QEE223 pKa = 3.99WRR225 pKa = 11.84GRR227 pKa = 11.84VEE229 pKa = 4.15VVAMDD234 pKa = 4.21GFTGFKK240 pKa = 10.09SAAGEE245 pKa = 4.05EE246 pKa = 4.49LPQARR251 pKa = 11.84AVMDD255 pKa = 4.41PFHH258 pKa = 7.11VVALAARR265 pKa = 11.84KK266 pKa = 9.32LDD268 pKa = 3.27QCRR271 pKa = 11.84RR272 pKa = 11.84RR273 pKa = 11.84IQRR276 pKa = 11.84AITGRR281 pKa = 11.84RR282 pKa = 11.84GRR284 pKa = 11.84AGDD287 pKa = 3.26RR288 pKa = 11.84LYY290 pKa = 10.75RR291 pKa = 11.84ARR293 pKa = 11.84RR294 pKa = 11.84TLLTGAGLLTDD305 pKa = 4.28AQAEE309 pKa = 4.08RR310 pKa = 11.84LEE312 pKa = 4.11NLFADD317 pKa = 4.11EE318 pKa = 3.8RR319 pKa = 11.84HH320 pKa = 6.13AAVQAAWGVYY330 pKa = 7.36QRR332 pKa = 11.84LIQAYY337 pKa = 7.74RR338 pKa = 11.84TEE340 pKa = 4.01EE341 pKa = 4.11AGLGKK346 pKa = 10.67YY347 pKa = 10.32LMQRR351 pKa = 11.84LIDD354 pKa = 3.9SLRR357 pKa = 11.84QAVPDD362 pKa = 3.89GLEE365 pKa = 4.33EE366 pKa = 4.08IQTLARR372 pKa = 11.84TLTEE376 pKa = 3.82RR377 pKa = 11.84ASDD380 pKa = 2.91ILAYY384 pKa = 9.92FDD386 pKa = 5.12RR387 pKa = 11.84PRR389 pKa = 11.84TSNGPTEE396 pKa = 4.92AINGRR401 pKa = 11.84LEE403 pKa = 3.89QLRR406 pKa = 11.84GIALGFRR413 pKa = 11.84NLTHH417 pKa = 4.71YY418 pKa = 8.32TIRR421 pKa = 11.84SLIHH425 pKa = 5.41TGRR428 pKa = 11.84LKK430 pKa = 11.03DD431 pKa = 3.65HH432 pKa = 6.99LAATTT437 pKa = 3.53

Molecular weight: 48.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2638

0

2638

910945

35

3150

345.3

36.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.07 ± 0.072

0.776 ± 0.013

5.788 ± 0.035

5.725 ± 0.044

2.485 ± 0.027

8.92 ± 0.049

2.107 ± 0.022

3.963 ± 0.033

2.18 ± 0.036

10.025 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.007 ± 0.021

1.956 ± 0.031

5.706 ± 0.04

3.181 ± 0.026

7.281 ± 0.057

6.546 ± 0.04

6.399 ± 0.038

8.476 ± 0.045

1.468 ± 0.024

1.94 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski