Cereal yellow dwarf virus RPS

Taxonomy: Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Sobelivirales; Solemoviridae; Polerovirus

Average proteome isoelectric point is 8.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9IZF6|Q9IZF6_9LUTE Serine protease OS=Cereal yellow dwarf virus RPS OX=228582 PE=4 SV=1
MM1 pKa = 7.45GPKK4 pKa = 9.78KK5 pKa = 10.62LSFSVFLWLMCFLSFSQGNHH25 pKa = 4.7TGMATGSDD33 pKa = 4.08FPSPTTLIYY42 pKa = 10.85SGGVWPLVTPHH53 pKa = 6.71SSPVAGEE60 pKa = 4.24KK61 pKa = 9.43CTLTCAPCPVRR72 pKa = 11.84SITEE76 pKa = 3.73PSYY79 pKa = 11.53KK80 pKa = 10.24EE81 pKa = 4.41LLQQLWVKK89 pKa = 10.62AWLDD93 pKa = 3.46SRR95 pKa = 11.84ALCFTAIDD103 pKa = 3.61SSSRR107 pKa = 11.84FLSHH111 pKa = 7.38AYY113 pKa = 9.4EE114 pKa = 4.38LSSATARR121 pKa = 11.84ALFGQVLWFAVYY133 pKa = 10.07LWTNVLLQTARR144 pKa = 11.84IVCSVVASYY153 pKa = 10.77YY154 pKa = 10.53LQVASLISLGITTSWIYY171 pKa = 10.82KK172 pKa = 7.94ILRR175 pKa = 11.84WTFGTLPASLCIRR188 pKa = 11.84LGKK191 pKa = 9.88SICRR195 pKa = 11.84VLTCRR200 pKa = 11.84KK201 pKa = 9.02FFNEE205 pKa = 3.67KK206 pKa = 10.02SVAGFDD212 pKa = 4.07SYY214 pKa = 11.54SIPQSPPKK222 pKa = 10.26KK223 pKa = 10.28SVITLRR229 pKa = 11.84RR230 pKa = 11.84ADD232 pKa = 3.52KK233 pKa = 9.14THH235 pKa = 6.38VGFAVCIRR243 pKa = 11.84LFNNSNALVTSEE255 pKa = 4.3HH256 pKa = 6.28NLRR259 pKa = 11.84EE260 pKa = 3.73ADD262 pKa = 3.23AFYY265 pKa = 11.08SPRR268 pKa = 11.84TGRR271 pKa = 11.84AIKK274 pKa = 10.18LAEE277 pKa = 4.14FKK279 pKa = 11.12VIFKK283 pKa = 10.77DD284 pKa = 3.1ADD286 pKa = 3.73LDD288 pKa = 3.97VAIVAGPDD296 pKa = 2.87NWEE299 pKa = 4.06SAFGCGSVHH308 pKa = 6.19FTTHH312 pKa = 6.8DD313 pKa = 3.46RR314 pKa = 11.84LAKK317 pKa = 10.27CPAQIYY323 pKa = 10.35VIDD326 pKa = 4.45GEE328 pKa = 4.21DD329 pKa = 3.25WRR331 pKa = 11.84AHH333 pKa = 4.59SAKK336 pKa = 10.47VVGHH340 pKa = 6.66FDD342 pKa = 2.95NFAQVLSNTKK352 pKa = 9.88PGFSGAGYY360 pKa = 9.22FHH362 pKa = 7.39GKK364 pKa = 7.28TLLGVHH370 pKa = 6.77KK371 pKa = 10.32GHH373 pKa = 7.52AGKK376 pKa = 10.24DD377 pKa = 3.49YY378 pKa = 10.82NFNLMAPLPAIPGLTSPKK396 pKa = 10.3YY397 pKa = 9.9EE398 pKa = 4.26IEE400 pKa = 4.06SDD402 pKa = 3.8PPQGLIFPSEE412 pKa = 4.04VAEE415 pKa = 4.86EE416 pKa = 3.97ITKK419 pKa = 9.35TIQSVYY425 pKa = 11.22NDD427 pKa = 3.56FLKK430 pKa = 10.66LDD432 pKa = 3.82KK433 pKa = 10.85SIHH436 pKa = 6.08SKK438 pKa = 9.7GKK440 pKa = 7.18EE441 pKa = 3.84WKK443 pKa = 10.68GGVAWADD450 pKa = 3.59LEE452 pKa = 4.74DD453 pKa = 3.89EE454 pKa = 4.24VRR456 pKa = 11.84KK457 pKa = 10.1VGKK460 pKa = 9.79RR461 pKa = 11.84QGGRR465 pKa = 11.84VRR467 pKa = 11.84RR468 pKa = 11.84TNRR471 pKa = 11.84STKK474 pKa = 9.59SQGRR478 pKa = 11.84YY479 pKa = 8.75KK480 pKa = 10.53RR481 pKa = 11.84NKK483 pKa = 9.29EE484 pKa = 3.97SCCTFFAEE492 pKa = 4.6GTAAPRR498 pKa = 11.84CIPTHH503 pKa = 4.67THH505 pKa = 6.24NLDD508 pKa = 3.98DD509 pKa = 4.07NPMFSRR515 pKa = 11.84CYY517 pKa = 10.56CNIPGHH523 pKa = 6.49KK524 pKa = 10.02CPFWDD529 pKa = 3.61VSARR533 pKa = 11.84RR534 pKa = 11.84DD535 pKa = 3.3AEE537 pKa = 4.09LNEE540 pKa = 4.19FARR543 pKa = 11.84TEE545 pKa = 3.98DD546 pKa = 2.98RR547 pKa = 11.84HH548 pKa = 7.3VEE550 pKa = 3.78DD551 pKa = 5.41RR552 pKa = 11.84EE553 pKa = 3.62IDD555 pKa = 3.68NRR557 pKa = 11.84SGRR560 pKa = 11.84CTSSEE565 pKa = 3.92EE566 pKa = 3.89TSRR569 pKa = 11.84QARR572 pKa = 11.84LQQEE576 pKa = 3.9TRR578 pKa = 11.84AWQQYY583 pKa = 8.62FADD586 pKa = 4.01VYY588 pKa = 8.55TWEE591 pKa = 4.52ISTSEE596 pKa = 3.94QEE598 pKa = 4.06VPGFQRR604 pKa = 11.84VGKK607 pKa = 10.19LSPQYY612 pKa = 10.35YY613 pKa = 9.04PRR615 pKa = 11.84ARR617 pKa = 11.84STTAWGEE624 pKa = 4.12RR625 pKa = 11.84LCAEE629 pKa = 4.48HH630 pKa = 7.31PLLGEE635 pKa = 4.01KK636 pKa = 9.56TKK638 pKa = 11.02GFGWPAVGATAEE650 pKa = 4.28LTSLRR655 pKa = 11.84LQAARR660 pKa = 11.84WLEE663 pKa = 3.8RR664 pKa = 11.84SEE666 pKa = 4.28SAKK669 pKa = 10.39IPSDD673 pKa = 3.28AARR676 pKa = 11.84KK677 pKa = 9.11NVIDD681 pKa = 4.02RR682 pKa = 11.84TVQAYY687 pKa = 8.96SNCKK691 pKa = 9.05TNVPRR696 pKa = 11.84CTRR699 pKa = 11.84DD700 pKa = 3.14QLNWDD705 pKa = 3.97DD706 pKa = 4.37FRR708 pKa = 11.84IDD710 pKa = 3.29FLEE713 pKa = 4.94AIKK716 pKa = 10.62SLQLDD721 pKa = 3.75AGVGIPMITAGLPTHH736 pKa = 6.9RR737 pKa = 11.84GWVEE741 pKa = 4.24DD742 pKa = 4.09PDD744 pKa = 4.35LLPVLARR751 pKa = 11.84LTFDD755 pKa = 4.64RR756 pKa = 11.84LLTMSKK762 pKa = 10.8ASLEE766 pKa = 4.33TRR768 pKa = 11.84SPEE771 pKa = 3.89QLVKK775 pKa = 10.99EE776 pKa = 4.26NLCDD780 pKa = 4.79PIRR783 pKa = 11.84LFVKK787 pKa = 10.15QEE789 pKa = 3.56PHH791 pKa = 6.14KK792 pKa = 10.47QSKK795 pKa = 10.18LDD797 pKa = 3.38EE798 pKa = 4.27GRR800 pKa = 11.84YY801 pKa = 8.96RR802 pKa = 11.84LIMSVSLIDD811 pKa = 3.51QLVARR816 pKa = 11.84VLFQAQNKK824 pKa = 9.79SEE826 pKa = 4.03IALWSAIPSKK836 pKa = 10.64PGFGLSTEE844 pKa = 4.32DD845 pKa = 3.64QVEE848 pKa = 4.23SFINVLADD856 pKa = 3.24TAGARR861 pKa = 11.84PEE863 pKa = 4.31EE864 pKa = 4.68ICDD867 pKa = 3.04KK868 pKa = 10.61WRR870 pKa = 11.84DD871 pKa = 3.63LLVPTDD877 pKa = 3.84CSGFDD882 pKa = 3.34WSVSDD887 pKa = 4.78WMLADD892 pKa = 4.01DD893 pKa = 3.87MEE895 pKa = 4.42VRR897 pKa = 11.84NRR899 pKa = 11.84LTIDD903 pKa = 3.34CNEE906 pKa = 4.17LTRR909 pKa = 11.84HH910 pKa = 5.95LRR912 pKa = 11.84AVWLQGISNSVLCLSDD928 pKa = 3.27GTMLSQVKK936 pKa = 10.09PGVQKK941 pKa = 10.66SGSYY945 pKa = 8.27NTSSTNSRR953 pKa = 11.84IRR955 pKa = 11.84VMAAYY960 pKa = 9.92HH961 pKa = 6.58CGASWAIAMGDD972 pKa = 3.84DD973 pKa = 4.05ALEE976 pKa = 4.56APDD979 pKa = 4.44TDD981 pKa = 3.56LSKK984 pKa = 11.61YY985 pKa = 10.03KK986 pKa = 10.67DD987 pKa = 3.37LGFKK991 pKa = 10.77VEE993 pKa = 4.04VSKK996 pKa = 10.86EE997 pKa = 3.96LEE999 pKa = 4.1FCSHH1003 pKa = 6.51IFKK1006 pKa = 10.88SPTLAIPVNANKK1018 pKa = 9.37MLYY1021 pKa = 10.12RR1022 pKa = 11.84LIHH1025 pKa = 6.62GYY1027 pKa = 9.99NPEE1030 pKa = 4.27CGNAEE1035 pKa = 4.24VIVNYY1040 pKa = 10.48LNAASSVLHH1049 pKa = 6.15EE1050 pKa = 4.61LRR1052 pKa = 11.84HH1053 pKa = 5.37DD1054 pKa = 3.9QEE1056 pKa = 4.61LCALLHH1062 pKa = 5.68MWLVSGITTKK1072 pKa = 11.17DD1073 pKa = 3.01NN1074 pKa = 3.52

Molecular weight: 120.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9IZF4|Q9IZF4_9LUTE Readthrough protein OS=Cereal yellow dwarf virus RPS OX=228582 PE=3 SV=1
MM1 pKa = 6.73STVVLRR7 pKa = 11.84SNGNGSRR14 pKa = 11.84RR15 pKa = 11.84RR16 pKa = 11.84RR17 pKa = 11.84QRR19 pKa = 11.84VARR22 pKa = 11.84RR23 pKa = 11.84RR24 pKa = 11.84PAVRR28 pKa = 11.84TQPVVVVTPNGPARR42 pKa = 11.84RR43 pKa = 11.84GRR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84GPARR51 pKa = 11.84PRR53 pKa = 11.84RR54 pKa = 11.84RR55 pKa = 11.84RR56 pKa = 11.84TPGLGGGGRR65 pKa = 11.84GEE67 pKa = 3.99TFVFTKK73 pKa = 10.68DD74 pKa = 3.19SLAGNSSGSITFGPSLSDD92 pKa = 3.4YY93 pKa = 10.75PAFQNGVLKK102 pKa = 10.51AYY104 pKa = 10.18HH105 pKa = 6.61EE106 pKa = 4.26YY107 pKa = 10.77KK108 pKa = 9.46ITGCILQFVSEE119 pKa = 4.53ASSTAAGSIAYY130 pKa = 9.34EE131 pKa = 4.26LDD133 pKa = 3.41PHH135 pKa = 6.82CKK137 pKa = 9.42ISSLASTNNKK147 pKa = 7.78FTITKK152 pKa = 8.31TGARR156 pKa = 11.84SFPAKK161 pKa = 9.68MINGLEE167 pKa = 3.96WHH169 pKa = 7.13PSDD172 pKa = 4.26EE173 pKa = 4.26DD174 pKa = 3.37QFRR177 pKa = 11.84ILYY180 pKa = 8.98KK181 pKa = 10.99GNGASSVAGSFKK193 pKa = 9.64ITLRR197 pKa = 11.84VQLQNPKK204 pKa = 10.5

Molecular weight: 22.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2939

153

1074

489.8

54.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.098 ± 0.337

1.905 ± 0.513

4.491 ± 0.489

4.798 ± 0.488

3.981 ± 0.306

7.043 ± 0.587

2.246 ± 0.271

4.627 ± 0.186

5.104 ± 0.627

8.302 ± 1.088

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.327 ± 0.176

3.641 ± 0.461

6.363 ± 0.776

3.879 ± 0.439

6.635 ± 0.869

10.174 ± 0.751

6.227 ± 0.257

6.397 ± 0.111

1.871 ± 0.297

2.858 ± 0.407
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski