Faeces associated gemycircularvirus 19

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Genomoviridae; Gemycircularvirus; Gemycircularvirus porci1; Porcine associated gemycircularvirus 1

Average proteome isoelectric point is 6.58

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A168MGA2|A0A168MGA2_9VIRU Replication associated protein OS=Faeces associated gemycircularvirus 19 OX=1843739 PE=3 SV=1
MM1 pKa = 7.4SAFHH5 pKa = 6.68FSARR9 pKa = 11.84YY10 pKa = 9.45VLLTYY15 pKa = 9.0PQSGEE20 pKa = 3.86LSEE23 pKa = 4.35WAVLDD28 pKa = 4.71HH29 pKa = 7.1ISGLGAEE36 pKa = 4.74CIIGRR41 pKa = 11.84EE42 pKa = 4.05DD43 pKa = 3.35HH44 pKa = 7.18ADD46 pKa = 3.64GGTHH50 pKa = 6.04LHH52 pKa = 5.93VFADD56 pKa = 4.85FGRR59 pKa = 11.84KK60 pKa = 8.21KK61 pKa = 9.8QSRR64 pKa = 11.84RR65 pKa = 11.84GDD67 pKa = 3.58YY68 pKa = 10.34FDD70 pKa = 5.37VGGKK74 pKa = 9.22HH75 pKa = 6.11PNVVPSKK82 pKa = 10.3GRR84 pKa = 11.84PEE86 pKa = 4.58GGWDD90 pKa = 3.41YY91 pKa = 10.93ATKK94 pKa = 10.52DD95 pKa = 3.6GNVVAGGLGRR105 pKa = 11.84PGTSGLPKK113 pKa = 10.41APNPWRR119 pKa = 11.84EE120 pKa = 3.71IVGAEE125 pKa = 3.81GRR127 pKa = 11.84EE128 pKa = 3.91EE129 pKa = 4.09FLDD132 pKa = 4.45LVRR135 pKa = 11.84QLDD138 pKa = 3.77PKK140 pKa = 11.22SFVLKK145 pKa = 9.09HH146 pKa = 4.95QEE148 pKa = 3.38IVRR151 pKa = 11.84YY152 pKa = 9.92ADD154 pKa = 2.87IFFAEE159 pKa = 4.26DD160 pKa = 3.23RR161 pKa = 11.84EE162 pKa = 4.59PYY164 pKa = 10.05VGPDD168 pKa = 4.0GIRR171 pKa = 11.84FEE173 pKa = 5.22LGMVPQLDD181 pKa = 3.24EE182 pKa = 3.93WRR184 pKa = 11.84RR185 pKa = 11.84EE186 pKa = 4.08SLGDD190 pKa = 3.43NPVEE194 pKa = 4.57GKK196 pKa = 8.11CTPSLASSGGPGTDD210 pKa = 3.53LSS212 pKa = 4.01

Molecular weight: 23.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A168MG89|A0A168MG89_9VIRU RepA OS=Faeces associated gemycircularvirus 19 OX=1843739 PE=3 SV=1
MM1 pKa = 7.36PRR3 pKa = 11.84YY4 pKa = 9.42RR5 pKa = 11.84RR6 pKa = 11.84YY7 pKa = 9.81RR8 pKa = 11.84AQPRR12 pKa = 11.84LKK14 pKa = 10.36RR15 pKa = 11.84RR16 pKa = 11.84MKK18 pKa = 10.45KK19 pKa = 10.22AVLNTTSTKK28 pKa = 10.35KK29 pKa = 9.95RR30 pKa = 11.84DD31 pKa = 3.47NMTPISNTTALGAPTPNILRR51 pKa = 11.84NGAVVIKK58 pKa = 10.78GGDD61 pKa = 3.51PSSAAGAGVSGAIFVWSPTARR82 pKa = 11.84PMNDD86 pKa = 2.57NTNAEE91 pKa = 4.16NTRR94 pKa = 11.84VKK96 pKa = 10.5RR97 pKa = 11.84DD98 pKa = 3.36VYY100 pKa = 11.06HH101 pKa = 6.45KK102 pKa = 10.78GFRR105 pKa = 11.84EE106 pKa = 4.02KK107 pKa = 11.12VKK109 pKa = 10.76VEE111 pKa = 4.49SNSSHH116 pKa = 5.57PWIWRR121 pKa = 11.84RR122 pKa = 11.84IVVEE126 pKa = 4.15TKK128 pKa = 10.27TDD130 pKa = 3.36DD131 pKa = 3.51FNYY134 pKa = 10.37LGEE137 pKa = 5.02SEE139 pKa = 5.08DD140 pKa = 4.32QPTLPPRR147 pKa = 11.84AFQPYY152 pKa = 7.77YY153 pKa = 10.27QGGEE157 pKa = 4.23GVSRR161 pKa = 11.84LWYY164 pKa = 8.64NHH166 pKa = 5.64YY167 pKa = 11.06GNRR170 pKa = 11.84TGPTDD175 pKa = 3.4TRR177 pKa = 11.84IDD179 pKa = 3.79SVLKK183 pKa = 10.0TIADD187 pKa = 3.82DD188 pKa = 4.62LFEE191 pKa = 4.48GTQNHH196 pKa = 6.73DD197 pKa = 3.19WLNTVTAKK205 pKa = 10.5VDD207 pKa = 3.62LDD209 pKa = 4.23RR210 pKa = 11.84YY211 pKa = 6.69TLRR214 pKa = 11.84YY215 pKa = 10.19DD216 pKa = 3.0KK217 pKa = 11.09TRR219 pKa = 11.84VFRR222 pKa = 11.84SGNDD226 pKa = 2.85AGFIKK231 pKa = 9.91TVNFYY236 pKa = 11.08HH237 pKa = 7.05SFEE240 pKa = 3.73KK241 pKa = 9.92TMYY244 pKa = 9.72YY245 pKa = 10.8DD246 pKa = 3.57HH247 pKa = 7.83DD248 pKa = 4.09EE249 pKa = 4.68DD250 pKa = 5.88RR251 pKa = 11.84NGTNPQSWVCAPALKK266 pKa = 10.77GMGNVYY272 pKa = 10.15IIDD275 pKa = 4.26IIEE278 pKa = 4.29SGISADD284 pKa = 3.46DD285 pKa = 3.44TDD287 pKa = 4.1YY288 pKa = 11.72LRR290 pKa = 11.84ITPEE294 pKa = 3.56SCAYY298 pKa = 7.48WHH300 pKa = 6.44EE301 pKa = 4.3RR302 pKa = 3.41

Molecular weight: 34.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

857

212

343

285.7

32.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.301 ± 0.068

0.817 ± 0.068

7.468 ± 0.09

5.951 ± 0.75

4.084 ± 0.474

10.152 ± 1.521

2.684 ± 0.223

4.201 ± 0.374

4.901 ± 0.326

7.118 ± 1.084

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.867 ± 0.335

3.734 ± 1.242

6.534 ± 0.389

2.217 ± 0.099

7.818 ± 0.358

6.301 ± 0.152

4.784 ± 1.791

6.884 ± 0.261

2.334 ± 0.177

3.851 ± 0.625
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski