Capybara microvirus Cap3_SP_449

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W530|A0A4P8W530_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_449 OX=2585459 PE=4 SV=1
MM1 pKa = 7.69TYY3 pKa = 8.64FTIKK7 pKa = 10.25DD8 pKa = 3.64DD9 pKa = 3.64KK10 pKa = 10.24TGSFEE15 pKa = 4.75GLFPFPNIEE24 pKa = 3.88VAKK27 pKa = 10.49RR28 pKa = 11.84NLGYY32 pKa = 11.21ALTHH36 pKa = 5.7KK37 pKa = 10.41QMPEE41 pKa = 3.65IMCEE45 pKa = 4.25FPADD49 pKa = 3.68YY50 pKa = 11.07QLFLVGDD57 pKa = 4.86LDD59 pKa = 4.06PKK61 pKa = 10.56TGVFSPDD68 pKa = 2.99QKK70 pKa = 11.1YY71 pKa = 9.05VCCLLEE77 pKa = 4.16CVNGQSSPNN86 pKa = 3.38

Molecular weight: 9.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5Y9|A0A4P8W5Y9_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_449 OX=2585459 PE=4 SV=1
MM1 pKa = 7.6SYY3 pKa = 10.95AAGEE7 pKa = 4.36GSRR10 pKa = 11.84GVASRR15 pKa = 11.84VLGRR19 pKa = 11.84KK20 pKa = 8.71GPKK23 pKa = 9.52GRR25 pKa = 11.84QTRR28 pKa = 11.84AAQAAQKK35 pKa = 10.21NKK37 pKa = 10.06KK38 pKa = 9.79SEE40 pKa = 4.0EE41 pKa = 4.05NVRR44 pKa = 11.84GGHH47 pKa = 6.49CSPDD51 pKa = 2.93SRR53 pKa = 11.84QAGRR57 pKa = 11.84RR58 pKa = 11.84SHH60 pKa = 6.4EE61 pKa = 4.39KK62 pKa = 10.36RR63 pKa = 11.84DD64 pKa = 3.86DD65 pKa = 4.24DD66 pKa = 5.92LNDD69 pKa = 3.5DD70 pKa = 4.34AKK72 pKa = 10.93NVRR75 pKa = 11.84IGYY78 pKa = 9.11LRR80 pKa = 11.84AARR83 pKa = 11.84RR84 pKa = 3.45

Molecular weight: 9.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1565

84

558

195.6

21.84

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.179 ± 1.062

1.534 ± 0.535

6.134 ± 0.334

6.645 ± 1.662

4.089 ± 0.642

7.54 ± 0.583

2.045 ± 0.301

5.176 ± 0.556

6.518 ± 1.59

8.243 ± 0.678

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.173 ± 0.276

4.409 ± 0.466

4.473 ± 0.94

3.898 ± 0.506

5.112 ± 1.009

7.348 ± 1.12

6.134 ± 0.987

4.984 ± 0.667

1.597 ± 0.434

3.77 ± 0.556
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski