Porphyromonas endodontalis (strain ATCC 35406 / BCRC 14492 / JCM 8526 / NCTC 13058 / HG 370)

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Porphyromonas; Porphyromonas endodontalis

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1965 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C3J9E9|C3J9E9_POREA PAP2 family protein OS=Porphyromonas endodontalis (strain ATCC 35406 / BCRC 14492 / JCM 8526 / NCTC 13058 / HG 370) OX=553175 GN=POREN0001_1093 PE=4 SV=1
MM1 pKa = 7.63EE2 pKa = 4.62ATDD5 pKa = 4.17LNEE8 pKa = 3.23ARR10 pKa = 11.84IYY12 pKa = 10.4VGTYY16 pKa = 9.66AKK18 pKa = 10.48YY19 pKa = 11.08NNGSLQGEE27 pKa = 4.35WVEE30 pKa = 5.59LSDD33 pKa = 6.54FYY35 pKa = 11.8DD36 pKa = 3.73LDD38 pKa = 3.98GFMEE42 pKa = 4.67RR43 pKa = 11.84CAEE46 pKa = 3.73IHH48 pKa = 6.44EE49 pKa = 4.91DD50 pKa = 3.87EE51 pKa = 4.66EE52 pKa = 5.21APEE55 pKa = 3.96YY56 pKa = 10.31MFQAWEE62 pKa = 4.46EE63 pKa = 4.28IPDD66 pKa = 3.75GLIDD70 pKa = 4.0EE71 pKa = 4.67GHH73 pKa = 6.61LEE75 pKa = 3.97EE76 pKa = 5.04TFFEE80 pKa = 5.11LRR82 pKa = 11.84DD83 pKa = 3.54EE84 pKa = 4.95LDD86 pKa = 3.37RR87 pKa = 11.84LNDD90 pKa = 3.65KK91 pKa = 10.7EE92 pKa = 5.76KK93 pKa = 10.68GAFWVWADD101 pKa = 3.79GNSSQLTQDD110 pKa = 3.22AYY112 pKa = 11.76SLVKK116 pKa = 10.47SFQSDD121 pKa = 4.36YY122 pKa = 10.36IGSYY126 pKa = 10.73ASRR129 pKa = 11.84EE130 pKa = 4.07DD131 pKa = 3.69FAEE134 pKa = 4.24EE135 pKa = 3.68LAKK138 pKa = 10.14MEE140 pKa = 4.32NALSDD145 pKa = 3.48FALNYY150 pKa = 10.23FDD152 pKa = 3.98FSKK155 pKa = 11.2YY156 pKa = 10.79ADD158 pKa = 4.7DD159 pKa = 5.56LFDD162 pKa = 3.53MDD164 pKa = 4.02FWYY167 pKa = 11.21NDD169 pKa = 3.24GYY171 pKa = 10.84VFRR174 pKa = 11.84NNN176 pKa = 3.2

Molecular weight: 20.7 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C3JA08|C3JA08_POREA Uncharacterized protein OS=Porphyromonas endodontalis (strain ATCC 35406 / BCRC 14492 / JCM 8526 / NCTC 13058 / HG 370) OX=553175 GN=POREN0001_0930 PE=4 SV=1
MM1 pKa = 7.34GVYY4 pKa = 9.91EE5 pKa = 5.27SPDD8 pKa = 3.44SLLKK12 pKa = 9.82EE13 pKa = 4.0HH14 pKa = 6.47RR15 pKa = 11.84QEE17 pKa = 3.46ISGIRR22 pKa = 11.84KK23 pKa = 8.6LAYY26 pKa = 9.18RR27 pKa = 11.84HH28 pKa = 6.25LGRR31 pKa = 11.84HH32 pKa = 5.73LMNCNVKK39 pKa = 10.27KK40 pKa = 10.03IRR42 pKa = 11.84NRR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84AKK48 pKa = 10.55DD49 pKa = 3.03II50 pKa = 3.92

Molecular weight: 5.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1965

0

1965

619246

35

2494

315.1

35.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.806 ± 0.056

1.105 ± 0.021

5.042 ± 0.043

7.031 ± 0.063

4.209 ± 0.03

6.891 ± 0.046

2.132 ± 0.022

6.436 ± 0.049

5.717 ± 0.059

10.255 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.395 ± 0.024

3.989 ± 0.041

4.308 ± 0.033

3.626 ± 0.035

5.533 ± 0.045

6.692 ± 0.042

5.52 ± 0.042

6.36 ± 0.045

1.068 ± 0.02

3.887 ± 0.036
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski