Nile crocodilepox virus (isolate Crocodylus niloticus/Zimbabwe/Ume/2001) (CRV)

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Pokkesviricetes; Chitovirales; Poxviridae; Chordopoxvirinae; Crocodylidpoxvirus; Nile crocodilepox virus

Average proteome isoelectric point is 6.98

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 172 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q070N3|Q070N3_CPRVZ Uncharacterized protein OS=Nile crocodilepox virus (isolate Crocodylus niloticus/Zimbabwe/Ume/2001) OX=1289473 GN=CRV018 PE=4 SV=1
MM1 pKa = 7.59LEE3 pKa = 4.35AEE5 pKa = 4.82RR6 pKa = 11.84GDD8 pKa = 3.14AGYY11 pKa = 7.91FTDD14 pKa = 6.01GDD16 pKa = 4.22DD17 pKa = 4.43VDD19 pKa = 5.67DD20 pKa = 6.08GSDD23 pKa = 3.6PDD25 pKa = 3.85EE26 pKa = 6.15DD27 pKa = 3.96GAADD31 pKa = 3.92PFEE34 pKa = 5.11HH35 pKa = 7.19SIVEE39 pKa = 4.09YY40 pKa = 11.08DD41 pKa = 3.71RR42 pKa = 11.84FPPLSGIRR50 pKa = 11.84HH51 pKa = 6.74DD52 pKa = 4.63LLCVSITLGPEE63 pKa = 3.72TRR65 pKa = 11.84EE66 pKa = 3.67TLYY69 pKa = 11.11LRR71 pKa = 11.84FLNALGAVEE80 pKa = 4.52TIMRR84 pKa = 11.84VIPVSALEE92 pKa = 4.0EE93 pKa = 4.07PFAYY97 pKa = 9.67EE98 pKa = 3.78HH99 pKa = 6.42QIVLSRR105 pKa = 11.84EE106 pKa = 3.91YY107 pKa = 10.3FSRR110 pKa = 11.84YY111 pKa = 9.4AAMDD115 pKa = 3.34MMACSSPDD123 pKa = 3.33APDD126 pKa = 3.57PCAYY130 pKa = 9.42IFSAAGIDD138 pKa = 3.97AINAFTASARR148 pKa = 11.84DD149 pKa = 3.78PEE151 pKa = 4.42EE152 pKa = 4.59EE153 pKa = 4.02PTATYY158 pKa = 10.92QFFVV162 pKa = 3.57

Molecular weight: 17.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q06ZY5|Q06ZY5_CPRVZ Uncharacterized protein OS=Nile crocodilepox virus (isolate Crocodylus niloticus/Zimbabwe/Ume/2001) OX=1289473 GN=CRV166 PE=4 SV=1
MM1 pKa = 7.33RR2 pKa = 11.84THH4 pKa = 7.2LFLSVFLRR12 pKa = 11.84FLLPRR17 pKa = 11.84RR18 pKa = 11.84PSRR21 pKa = 11.84ATSCRR26 pKa = 11.84AAAPRR31 pKa = 11.84CAPRR35 pKa = 11.84SRR37 pKa = 11.84PRR39 pKa = 11.84SRR41 pKa = 11.84RR42 pKa = 11.84PPRR45 pKa = 11.84PGPPRR50 pKa = 11.84PGSRR54 pKa = 11.84SRR56 pKa = 11.84ACGCRR61 pKa = 11.84GRR63 pKa = 11.84RR64 pKa = 11.84ARR66 pKa = 11.84LLRR69 pKa = 11.84LPLPLLPRR77 pKa = 11.84ARR79 pKa = 11.84SRR81 pKa = 11.84LPRR84 pKa = 11.84PRR86 pKa = 11.84RR87 pKa = 11.84PPLAAPALARR97 pKa = 11.84LPRR100 pKa = 11.84LPPRR104 pKa = 11.84ARR106 pKa = 11.84RR107 pKa = 11.84RR108 pKa = 11.84RR109 pKa = 11.84RR110 pKa = 11.84RR111 pKa = 11.84SRR113 pKa = 11.84PRR115 pKa = 11.84PRR117 pKa = 11.84DD118 pKa = 2.96RR119 pKa = 11.84PAARR123 pKa = 11.84RR124 pKa = 11.84RR125 pKa = 11.84APPRR129 pKa = 11.84TRR131 pKa = 11.84LPPPPPRR138 pKa = 11.84CRR140 pKa = 11.84PSPSRR145 pKa = 11.84SPPSRR150 pKa = 11.84RR151 pKa = 11.84SRR153 pKa = 11.84PRR155 pKa = 11.84AASSSPSTPTPPPSSPPLPTRR176 pKa = 11.84PPPSPRR182 pKa = 11.84PRR184 pKa = 11.84RR185 pKa = 11.84RR186 pKa = 11.84PRR188 pKa = 11.84AATATGFAPVLALVLDD204 pKa = 4.31PAPRR208 pKa = 11.84SSATRR213 pKa = 11.84SEE215 pKa = 4.18EE216 pKa = 3.93VPRR219 pKa = 11.84SGRR222 pKa = 11.84LRR224 pKa = 11.84RR225 pKa = 11.84TAFSRR230 pKa = 11.84SLLLFFLKK238 pKa = 10.41PPPFARR244 pKa = 11.84LASLASVPPLAPLARR259 pKa = 11.84DD260 pKa = 3.86LVARR264 pKa = 11.84SAPPPSAFPSSLAGKK279 pKa = 9.17GNRR282 pKa = 11.84GEE284 pKa = 4.27ARR286 pKa = 11.84ATASRR291 pKa = 11.84AFASVRR297 pKa = 11.84PASLARR303 pKa = 11.84RR304 pKa = 11.84LLPPPSRR311 pKa = 11.84PRR313 pKa = 11.84SRR315 pKa = 11.84EE316 pKa = 3.39KK317 pKa = 10.1GTEE320 pKa = 3.8EE321 pKa = 3.67RR322 pKa = 11.84RR323 pKa = 11.84ARR325 pKa = 11.84PPPAPSPPFARR336 pKa = 11.84RR337 pKa = 11.84RR338 pKa = 11.84SLGASSLRR346 pKa = 11.84LPVLARR352 pKa = 11.84GKK354 pKa = 9.78RR355 pKa = 11.84EE356 pKa = 3.47PRR358 pKa = 11.84RR359 pKa = 11.84GVRR362 pKa = 11.84CSRR365 pKa = 11.84ARR367 pKa = 11.84NDD369 pKa = 2.92AAARR373 pKa = 11.84RR374 pKa = 11.84TKK376 pKa = 10.54KK377 pKa = 10.5KK378 pKa = 10.15EE379 pKa = 3.71EE380 pKa = 4.02KK381 pKa = 10.61

Molecular weight: 42.23 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

172

0

172

59641

53

1941

346.8

38.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.92 ± 0.41

2.113 ± 0.088

6.195 ± 0.133

5.761 ± 0.125

4.604 ± 0.148

5.795 ± 0.245

1.856 ± 0.078

4.489 ± 0.189

3.711 ± 0.191

9.74 ± 0.199

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.88 ± 0.066

3.944 ± 0.154

5.508 ± 0.281

2.264 ± 0.102

8.56 ± 0.291

7.567 ± 0.216

4.755 ± 0.112

7.741 ± 0.161

0.676 ± 0.036

3.923 ± 0.129
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski