Capybara microvirus Cap3_SP_443

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W8L3|A0A4P8W8L3_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_443 OX=2585455 PE=4 SV=1
MM1 pKa = 7.29KK2 pKa = 10.54VKK4 pKa = 10.21IYY6 pKa = 10.58SAYY9 pKa = 10.36DD10 pKa = 3.38LPKK13 pKa = 10.15PSEE16 pKa = 4.06LTGFSPIEE24 pKa = 3.83KK25 pKa = 9.42TYY27 pKa = 10.11MEE29 pKa = 4.87QYY31 pKa = 10.61NKK33 pKa = 10.92DD34 pKa = 3.53GIKK37 pKa = 10.21EE38 pKa = 3.98IIEE41 pKa = 4.01VGEE44 pKa = 4.39TNWYY48 pKa = 10.9AEE50 pKa = 4.29VQSYY54 pKa = 11.56ADD56 pKa = 3.49EE57 pKa = 4.4TDD59 pKa = 3.14VNKK62 pKa = 10.43IMARR66 pKa = 11.84VAGGEE71 pKa = 4.13TGLLDD76 pKa = 3.75QMKK79 pKa = 10.4GFYY82 pKa = 10.4LDD84 pKa = 3.75TQGLPASLMEE94 pKa = 4.37AQNIILKK101 pKa = 8.67GQKK104 pKa = 10.45AFDD107 pKa = 3.91NLPAEE112 pKa = 4.43IRR114 pKa = 11.84RR115 pKa = 11.84MYY117 pKa = 11.22DD118 pKa = 2.78NDD120 pKa = 3.21AMKK123 pKa = 10.67FMANFDD129 pKa = 3.71YY130 pKa = 11.31DD131 pKa = 3.74QVAKK135 pKa = 10.77NLEE138 pKa = 4.01EE139 pKa = 4.2VQAGKK144 pKa = 10.52AVTQAVKK151 pKa = 10.74EE152 pKa = 4.23GGNDD156 pKa = 3.22NAEE159 pKa = 4.2NAA161 pKa = 4.07

Molecular weight: 18.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W8L3|A0A4P8W8L3_9VIRU Replication initiator protein OS=Capybara microvirus Cap3_SP_443 OX=2585455 PE=4 SV=1
MM1 pKa = 7.74ACQKK5 pKa = 9.24PLCFIEE11 pKa = 4.27YY12 pKa = 9.04PGEE15 pKa = 3.84RR16 pKa = 11.84RR17 pKa = 11.84KK18 pKa = 9.95ILPARR23 pKa = 11.84IWDD26 pKa = 3.81EE27 pKa = 3.72YY28 pKa = 11.12LAAKK32 pKa = 10.11RR33 pKa = 11.84DD34 pKa = 3.7GDD36 pKa = 3.94EE37 pKa = 4.33EE38 pKa = 4.44TLSRR42 pKa = 11.84APYY45 pKa = 8.63YY46 pKa = 10.44GATRR50 pKa = 11.84VVQIPCGQCIQCRR63 pKa = 11.84LDD65 pKa = 4.9KK66 pKa = 10.67SRR68 pKa = 11.84KK69 pKa = 6.06WANRR73 pKa = 11.84MMAEE77 pKa = 4.16ARR79 pKa = 11.84CWDD82 pKa = 3.31HH83 pKa = 7.45NYY85 pKa = 9.79FVTLTYY91 pKa = 10.94DD92 pKa = 3.87DD93 pKa = 3.68NHH95 pKa = 7.74LPIRR99 pKa = 11.84DD100 pKa = 3.62WFHH103 pKa = 7.93DD104 pKa = 3.77EE105 pKa = 4.94DD106 pKa = 5.17GSIQEE111 pKa = 4.81GVTLLPDD118 pKa = 4.77EE119 pKa = 4.83ISKK122 pKa = 10.18FMKK125 pKa = 10.22KK126 pKa = 10.07LRR128 pKa = 11.84VYY130 pKa = 9.38YY131 pKa = 9.85EE132 pKa = 3.71RR133 pKa = 11.84RR134 pKa = 11.84TGKK137 pKa = 8.51TGIRR141 pKa = 11.84FFGCGEE147 pKa = 3.95YY148 pKa = 10.83GEE150 pKa = 4.75KK151 pKa = 9.91SGRR154 pKa = 11.84PHH156 pKa = 4.84YY157 pKa = 10.48HH158 pKa = 6.7IILFNCEE165 pKa = 4.09LDD167 pKa = 3.59DD168 pKa = 4.64LKK170 pKa = 10.88PYY172 pKa = 10.34KK173 pKa = 9.93ATEE176 pKa = 4.25CGPLFNSAFLEE187 pKa = 4.74SIWSDD192 pKa = 3.3EE193 pKa = 4.18YY194 pKa = 10.84GQKK197 pKa = 10.86GYY199 pKa = 8.54VTVAPFTWDD208 pKa = 2.51TGAYY212 pKa = 7.04VARR215 pKa = 11.84YY216 pKa = 9.23IMKK219 pKa = 9.96KK220 pKa = 9.54QLGPPAYY227 pKa = 9.91SYY229 pKa = 11.58YY230 pKa = 10.36NEE232 pKa = 3.93HH233 pKa = 6.65RR234 pKa = 11.84KK235 pKa = 9.4IPEE238 pKa = 3.7YY239 pKa = 11.1VIMSRR244 pKa = 11.84NPGIGKK250 pKa = 9.79FYY252 pKa = 10.78YY253 pKa = 9.88DD254 pKa = 3.32QKK256 pKa = 11.11KK257 pKa = 10.88DD258 pKa = 3.64EE259 pKa = 4.57IYY261 pKa = 9.26EE262 pKa = 3.84TDD264 pKa = 3.42EE265 pKa = 5.05IIIHH269 pKa = 5.62KK270 pKa = 10.23HH271 pKa = 4.3GATIKK276 pKa = 10.35AKK278 pKa = 9.39PGKK281 pKa = 10.49YY282 pKa = 9.67FDD284 pKa = 4.18GYY286 pKa = 10.09YY287 pKa = 10.46AAEE290 pKa = 4.39EE291 pKa = 4.29PEE293 pKa = 3.95KK294 pKa = 10.82MEE296 pKa = 4.07VIKK299 pKa = 10.59RR300 pKa = 11.84KK301 pKa = 9.66RR302 pKa = 11.84EE303 pKa = 3.55RR304 pKa = 11.84AGYY307 pKa = 9.08MSEE310 pKa = 4.19LEE312 pKa = 3.98QRR314 pKa = 11.84RR315 pKa = 11.84QSGLTAQEE323 pKa = 3.97YY324 pKa = 10.42RR325 pKa = 11.84DD326 pKa = 3.8LQAEE330 pKa = 4.29SMARR334 pKa = 11.84RR335 pKa = 11.84MAGLSRR341 pKa = 11.84DD342 pKa = 3.38LDD344 pKa = 3.72

Molecular weight: 40.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1466

79

625

293.2

32.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.458 ± 2.108

0.75 ± 0.476

5.866 ± 0.822

7.094 ± 0.643

3.888 ± 0.744

8.595 ± 0.738

1.842 ± 0.287

4.911 ± 0.597

6.071 ± 0.642

6.003 ± 0.804

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.411 ± 0.267

4.638 ± 0.827

4.025 ± 0.822

4.57 ± 0.339

4.707 ± 0.927

7.094 ± 1.646

5.662 ± 0.695

5.457 ± 0.732

1.569 ± 0.29

5.389 ± 0.647
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski